PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074458001
Common NameGSBRNA2T00074458001, LOC106377536
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 243aa    MW: 27483 Da    PI: 4.6167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074458001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.4e-145699755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  GSBRNA2T00074458001 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                         57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1774998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-1352103No hitNo description
SuperFamilySSF474592.75E-1753115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-1655104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENIDQEFNN YWEHNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQN EESKLEAKIR ELESTPKSSL  120
SFSKDFDPDL LVPVTSKKMK QLDSGSSRSL IEVIELKVKS MGERIMVVNV KCNKRTDTMV  180
KLCEVFESLN LKILTSNLNS FSGMIFNTLF IEADEEEQEV VRLKIETGIG AYNETQSPTW  240
SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1454107962Transcription factor MYC2
5gnj_B7e-1454107962Transcription factor MYC2
5gnj_E7e-1454107962Transcription factor MYC2
5gnj_F7e-1454107962Transcription factor MYC2
5gnj_G7e-1454107962Transcription factor MYC2
5gnj_I7e-1454107962Transcription factor MYC2
5gnj_M7e-1454107962Transcription factor MYC2
5gnj_N7e-1454107962Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.254431e-167flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074458001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673249.11e-177transcription factor bHLH35 isoform X3
SwissprotQ2HIV91e-156BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A078HWP11e-176A0A078HWP1_BRANA; BnaC02g11780D protein
TrEMBLA0A3P6CQL81e-176A0A3P6CQL8_BRAOL; Uncharacterized protein
STRINGBra020462.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-143bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]