PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074410001
Common NameGSBRNA2T00074410001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 277aa    MW: 32150 Da    PI: 7.8772
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074410001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.81e-211662349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +n+ n qvtfskRr g++KKA+EL++LC+ae+ vi+fs+  k++ +
  GSBRNA2T00074410001 16 MKNENNLQVTFSKRRSGLFKKASELCTLCGAEIVVIVFSPGRKVFSF 62
                         58999***********************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.927666IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-32665IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-27785IPR002100Transcription factor, MADS-box
CDDcd002655.27E-33778No hitNo description
PRINTSPR004047.2E-18828IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231662IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVIKNKGRQK IEMVKMKNEN NLQVTFSKRR SGLFKKASEL CTLCGAEIVV IVFSPGRKVF  60
SFGHPNVDVV IDRFLKINPH HPHQNNNLQL NEACLNAVVQ DLNNHLTQVT EQLEEEKKRN  120
EDLKQKRKDD KKSENWWEDP IEGFNLRQLT EFKCGLENFK KTVTTEASKY LQATGHNFYF  180
GSSSNATFGI FDNDGNTNSE LDLFNHRRLV DMNTFSGNHQ NMIIPHHSTI PYGNNVIERF  240
APEHNQNQSQ YCFKQERASE CDRQPDHPPH YRHEYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A8e-16788183Myocyte-specific enhancer factor 2A
3kov_B8e-16788183Myocyte-specific enhancer factor 2A
3kov_I8e-16788183Myocyte-specific enhancer factor 2A
3kov_J8e-16788183Myocyte-specific enhancer factor 2A
3p57_A8e-16788183Myocyte-specific enhancer factor 2A
3p57_B8e-16788183Myocyte-specific enhancer factor 2A
3p57_C8e-16788183Myocyte-specific enhancer factor 2A
3p57_D8e-16788183Myocyte-specific enhancer factor 2A
3p57_I8e-16788183Myocyte-specific enhancer factor 2A
3p57_J8e-16788183Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074410001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111620.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-107AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A078HZK30.0A0A078HZK3_BRANA; BnaA01g25970D protein
TrEMBLA0A398ARI90.0A0A398ARI9_BRACM; Uncharacterized protein
STRINGBo1g112460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-100AGAMOUS-like 62
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  3. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  4. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  5. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  6. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]