PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00074396001 | ||||||||
Common Name | GSBRNA2T00074396001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 26870.5 Da PI: 5.1231 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 40 | 80 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + eE++l +d+++ +G++ W++Ia++++ gRt++++k++w+++ GSBRNA2T00074396001 40 SHEEEQLVIDLHAHMGNK-WSKIASRLP-GRTDNEIKNHWNTH 80 89****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-5 | 14 | 31 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.78E-21 | 16 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.066 | 17 | 30 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 27.572 | 31 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 32 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-15 | 39 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-12 | 40 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRQPCCDKL GLAGLRRCGK SCRLRWTNYI RPDLRRGLLS HEEEQLVIDL HAHMGNKWSK 60 IASRLPGRTD NEIKNHWNTH IKKKLVKMGI DPVTHQPLNQ DPNSTDNPKN SCSVSDDISM 120 VTKSSSTKNI ETNGTTTEDE SISTITDQNS SMDNDNHQLS NIYNDEEFFS YLWSDESTKA 180 ETPWSDSNYD VGGTLYHDNN VSCAGADFPI CSPERINGVD WTFQDYCQDF GVHDFGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-19 | 17 | 85 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00074396001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627209.1 | 1e-171 | PREDICTED: protein ODORANT1-like isoform X1 | ||||
Refseq | XP_013701026.1 | 1e-171 | protein ODORANT1-like | ||||
TrEMBL | A0A078HZJ6 | 1e-178 | A0A078HZJ6_BRANA; BnaC03g65090D protein | ||||
STRING | Bo3g165540.1 | 1e-170 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22680.1 | 1e-116 | myb domain protein 85 |
Publications ? help Back to Top | |||
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