PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00074350001 | ||||||||
Common Name | GSBRNA2T00074350001, LOC106389857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 543aa MW: 59174.3 Da PI: 7.5148 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.1 | 1.7e-09 | 187 | 210 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C ++++t tCk+G+ CkF H+ GSBRNA2T00074350001 187 EKDCTHYMQTRTCKFGEGCKFDHP 210 678********************9 PP | |||||||
2 | zf-CCCH | 33.2 | 8.6e-11 | 236 | 262 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ +t CkyG rCkF+H++ GSBRNA2T00074350001 236 PGEPDCPYYIKTQRCKYGLRCKFNHPK 262 5789*********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2e-12 | 281 | 305 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G +CkF+H++ GSBRNA2T00074350001 281 EPPCTFYMKTGKCKFGLTCKFHHPK 305 79*********************96 PP | |||||||
4 | zf-CCCH | 38.2 | 2.4e-12 | 353 | 377 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG CkyG++C+++H++ GSBRNA2T00074350001 353 EVDCPFYLKTGSCKYGATCRYNHPE 377 679********************96 PP | |||||||
5 | zf-CCCH | 41.1 | 2.9e-13 | 438 | 463 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++++tG+Ck+G+rC+F+H+ GSBRNA2T00074350001 438 PGQPECDYYMKTGECKFGERCRFHHP 463 5789*********************8 PP | |||||||
6 | zf-CCCH | 41.1 | 2.9e-13 | 495 | 517 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCkyG++CkF H+p GSBRNA2T00074350001 495 NCPYYMKTGTCKYGATCKFDHPP 517 7********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.258 | 184 | 212 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 186 | 211 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.23 | 186 | 211 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-7 | 187 | 210 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.826 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-4 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-7 | 237 | 262 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-5 | 240 | 262 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 241 | 260 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-6 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-10 | 281 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-5 | 282 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-5 | 283 | 304 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.3 | 350 | 378 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-6 | 350 | 377 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-10 | 353 | 377 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 354 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 356 | 377 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.788 | 437 | 465 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-7 | 437 | 464 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-6 | 439 | 468 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 439 | 463 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 443 | 465 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.375 | 490 | 518 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-7 | 490 | 517 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 494 | 517 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-11 | 494 | 517 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 496 | 515 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MAAHRHQLFT YALQPSLAAA STVSPAPPPP QPLPQPQQSL SLSSLYASSA ADRYYPDATF 60 RFLSRDGSEA LTNYQATVAS SSSSSAMYHH HHLPNAAAAS HLAYPPQLIH QEAWPPGVEP 120 PAAAAAAVEP LPPGVKRTSE ALYYPTLYGA HNPMGQTEAW YTTDYLTKRL KLESTSHLPV 180 YPQRAGEKDC THYMQTRTCK FGEGCKFDHP VWVPEGGIPD WKEAPVVPND EYPERPGEPD 240 CPYYIKTQRC KYGLRCKFNH PKTAAAVTVE TPDALPERPS EPPCTFYMKT GKCKFGLTCK 300 FHHPKDIQLP SSSQDNGSTE AVTSEPDVTN NPHVTFAPAA YYNSKGLPAR PAEVDCPFYL 360 KTGSCKYGAT CRYNHPERTA FTPQAAGINY PLVSPTSASV NLGLINSAAS LYQTLAQPTV 420 DVYNHALGAL TATYPQRPGQ PECDYYMKTG ECKFGERCRF HHPADRLNAT SKQAPQQPNV 480 KLSLAGYPRR EGAQNCPYYM KTGTCKYGAT CKFDHPPPGE VMAKTASEAE ADAAGGATDT 540 TQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.11540 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00074350001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586042.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X4 | ||||
Refseq | XP_013685659.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X4 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A078HXU1 | 0.0 | A0A078HXU1_BRANA; BnaC05g40550D protein | ||||
STRING | Bo5g133310.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9761 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Entrez Gene | 106389857 |
Publications ? help Back to Top | |||
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