PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074286001
Common NameGSBRNA2T00074286001, LOC106364750, LOC106364751
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 278aa    MW: 32200 Da    PI: 5.875
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074286001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-141663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +l +++   G g+W+  a+  g++R +k+c++rw++yl
  GSBRNA2T00074286001 16 KGPWTLEEDTILTNYISHNGEGRWNVLAKSSGLKRKGKSCRLRWLNYL 63
                         79******************************99************97 PP
2Myb_DNA-binding49.41e-1569112146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E++l+++++ q+G++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00074286001  69 RGNLTPQEQLLILELHCQWGNR-WSKIAQYLP-GRTDNEIKNYWRT 112
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3341163IPR017930Myb domain
SuperFamilySSF466891.05E-2814110IPR009057Homeodomain-like
SMARTSM007177.1E-121565IPR001005SANT/Myb domain
PfamPF002491.6E-121663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-211770IPR009057Homeodomain-like
CDDcd001675.73E-81863No hitNo description
PROSITE profilePS5129423.77264118IPR017930Myb domain
SMARTSM007174.9E-1368116IPR001005SANT/Myb domain
PfamPF002492.5E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2271117IPR009057Homeodomain-like
CDDcd001671.15E-973112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKKRCNENEE GVEQRKGPWT LEEDTILTNY ISHNGEGRWN VLAKSSGLKR KGKSCRLRWL  60
NYLKPDIKRG NLTPQEQLLI LELHCQWGNR WSKIAQYLPG RTDNEIKNYW RTRVQKQARQ  120
LNIDSSSHQF LEAVRSFWVP RLIHKMKDNS NTNTKTPHPD SLGPVSHDSG FNMGCSTSMS  180
QELTEMSQFI DLSDLETTNL MSLKGSRGSS NQCVSEEYYS SLPCLEEEYM VPTMGNSDIL  240
PFKDCHVADS SYEEDVTQDP MWNMDDIWQF EEYAHFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-24161184105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-24161184105C-Myb DNA-Binding Domain
1msf_C7e-24161184105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753LKRKGKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074286001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756630.0KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659722.10.0transcription factor MYB62-like
RefseqXP_013659724.10.0transcription factor MYB62-like
SwissprotQ9C9G71e-102MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A078HUE30.0A0A078HUE3_BRANA; BnaA09g28450D protein
STRINGBra024760.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-163myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]