PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074105001
Common NameGSBRNA2T00074105001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 130aa    MW: 14592.7 Da    PI: 7.4113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074105001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.5e-0629691055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         + R d++ ++++ L++l+ +      +K + a++L +A++YI+ Lq
  GSBRNA2T00074105001 29 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 69
                         67889999***********99.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.6421968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-101977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-42774IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-122783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-62973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MMMENKRNVC SLEDNSIKRH KSDLSFSSKE RKDKVGERIS ALQQLVSPYG KTDTASVLLE  60
AMQYIQFLQE QVKVLSAPYL QTTPITTHEE ELGEYRLRSR GLCLVPMEYT VGVAQTNGAD  120
IWAPVKTPV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.284891e-173seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074105001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144051.13e-93PREDICTED: transcription factor bHLH113
SwissprotQ7XJU21e-76BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A078HWH58e-92A0A078HWH5_BRANA; BnaA05g11200D protein
TrEMBLM4CN568e-92M4CN56_BRARP; Uncharacterized protein
STRINGBra005644.1-P1e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.56e-79bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]