PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00074042001

Common Name

GSBRNA2T00074042001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 415aa MW: 45183.3 Da PI: 10.1448

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00074042001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	71.9	9.4e-23	296	356	1	61
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l++++ +l+ GSBRNA2T00074042001 296 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSNNLRG 356 89*****************************************************999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	1.5E-30	41	136	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	1.3E-14	166	255	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.1E-19	290	356	No hit	No description
Pfam	PF00170	6.5E-21	296	358	IPR004827	Basic-leucine zipper domain
SMART	SM00338	3.0E-21	296	360	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.346	298	361	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-11	299	355	No hit	No description
CDD	cd14702	1.55E-21	301	352	No hit	No description
PROSITE pattern	PS00036	0	303	318	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MSQLIKHHRS LRFFSIWISE RAYRFLEKET IVVKCGNVKT MGKSEEPKVT KSDNKPSSPP 60 ADQTNVHVYP DWAAIQAYYG PRVAMPPYYN SAMAAASGHP PPPYMWNPQH MMSPYGTPYA 120 AVYPHGGGVY AHPGFPMPQS QKGAALSTPG TPLNIDTPSK STGNTENGLM KKLKEFDGLA 180 MSLGNGNNGD EGKRSRNSSE TDGSSDGSDG NTTGADEPKL KRSREGTPTK DEKKHLVQSS 240 SFRSVSQSSG DNVVKHSVQG GGGAIVSAAG VSANSNPTFM SQSLAMVPPE TWLQNERELK 300 RERRKQSNRE SARRSRLRKQ AETEELARKV EALTAENMAL RSELNQLNEK SNNLRGANAT 360 LLDKLKSSEP EKRVKSSGNG DDKNKKQGDN ETNSTSKLHQ LLDTKPRADG VAAR*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MSQLIKHHRS LRFFSIWISE RAYRFLEKET IVVKCGNVKT MGKSEEPKVT KSDNKPSSPP  60
ADQTNVHVYP DWAAIQAYYG PRVAMPPYYN SAMAAASGHP PPPYMWNPQH MMSPYGTPYA  120
AVYPHGGGVY AHPGFPMPQS QKGAALSTPG TPLNIDTPSK STGNTENGLM KKLKEFDGLA  180
MSLGNGNNGD EGKRSRNSSE TDGSSDGSDG NTTGADEPKL KRSREGTPTK DEKKHLVQSS  240
SFRSVSQSSG DNVVKHSVQG GGGAIVSAAG VSANSNPTFM SQSLAMVPPE TWLQNERELK  300
RERRKQSNRE SARRSRLRKQ AETEELARKV EALTAENMAL RSELNQLNEK SNNLRGANAT  360
LLDKLKSSEP EKRVKSSGNG DDKNKKQGDN ETNSTSKLHQ LLDTKPRADG VAAR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	318	RRSRLRK
2	312	319	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.2135	0.0	leaf\| microspore-derived embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269\|PubMed:8672884}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00074042001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BNU27108	0.0	U27108.1 Brassica napus transcription factor (BnGBF1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022556027.1	0.0	G-box-binding factor 3-like isoform X1
Swissprot	P42776	0.0	GBF3_ARATH; G-box-binding factor 3
TrEMBL	A0A078HXG9	0.0	A0A078HXG9_BRANA; BnaC04g01070D protein
STRING	Bo4g010410.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3571	26	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	0.0	G-box binding factor 3

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]