PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073974001
Common NameGSBRNA2T00073974001, LOC106369443
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 299aa    MW: 33885.7 Da    PI: 8.904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073974001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-32217275159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver a+dp++v++tYeg+H h+
  GSBRNA2T00073974001 217 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQNKCRVKKRVERLADDPRMVITTYEGRHLHP 275
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33202276IPR003657WRKY domain
SuperFamilySSF1182901.7E-28210276IPR003657WRKY domain
PROSITE profilePS5081129.78212277IPR003657WRKY domain
SMARTSM007744.7E-37217276IPR003657WRKY domain
PfamPF031061.6E-25218275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGTINQGISL YDEPQNIINP NSNHLGFFLS FPNQTLSSSS SSSSPSLASS FLVHHSLNSF  60
LQNNPPSFLT HPQDPINSMA NLPETLVSIY SLSSSKQKDA HDGIVNLDHH RLTGGISSQR  120
PSLNQWAGSC QAEYGYSKKN NHGSEIHVYD IDDDVGNGGR INDDEDHDQH SDTLRRHKRN  180
AMPVGVGCTL KMKKLKTRRK VREPRFCFKT LSDVDVLDDG YRWRKYGQKV VKNTQHPRSY  240
YRCTQNKCRV KKRVERLADD PRMVITTYEG RHLHPPSNHL DDDSLSFSHH SPLSNFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-25209274974Probable WRKY transcription factor 4
2lex_A6e-25209274974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073974001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896350.0AC189635.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004J05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121710.10.0PREDICTED: probable WRKY transcription factor 13
RefseqXP_013665053.10.0probable WRKY transcription factor 13
SwissprotQ9SVB71e-141WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A078HZ290.0A0A078HZ29_BRANA; BnaA01g05500D protein
TrEMBLA0A398AKA20.0A0A398AKA2_BRACM; Uncharacterized protein
TrEMBLM4D5V40.0M4D5V4_BRARP; Uncharacterized protein
STRINGBra011861.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-118WRKY DNA-binding protein 13
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]