PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073948001
Common NameGSBRNA2T00073948001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 213aa    MW: 23855.6 Da    PI: 5.09
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073948001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06533634
             zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
                         C+ ++++e++ fC  ++  lC+ C  + H
  GSBRNA2T00073948001  5 CDVCDKEEASVFCCADEAALCNGCDRHVH 33
                         *************************9988 PP
2zf-B_box30.57.4e-105592338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                         ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  GSBRNA2T00073948001 55 APLCDICGERRALLFCQEDRAILCRECDIPIHQAneHT 92
                         789*****************************767876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
SMARTSM003362.3E-7447IPR000315B-box-type zinc finger
CDDcd000218.94E-6533No hitNo description
SMARTSM003366.3E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18253100IPR000315B-box-type zinc finger
PfamPF006434.4E-85593IPR000315B-box-type zinc finger
CDDcd000219.06E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TPKDAPLCDI  60
CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL TGRHQALSLP IRIPESLQLC  120
SPSTTTSNYY YGLEETYQQA SDSGSGSGSG SISEYLMETL PGWRVEDLLE DPSCVSYEDN  180
NNIFTKINNN GVYDGSSSQY QHQGFWEQKP FS*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073948001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895211e-155AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148051.11e-130PREDICTED: B-box zinc finger protein 20-like
SwissprotQ0IGM71e-100BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A078HVT31e-158A0A078HVT3_BRANA; BnaA01g05290D protein
STRINGBra011879.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-98DBB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  3. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]