PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00073938001 | ||||||||
Common Name | GSBRNA2T00073938001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 288aa MW: 32195.4 Da PI: 9.8407 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 55.1 | 3.6e-17 | 1 | 120 | 1 | 100 |
GAGA_bind 1 mdddgsre..rnkg.yye...................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68 m++ g++e r + yy+ ++++l +++++ms++aerda+++er+ al++k++a+a rd+a+ rdkal+ GSBRNA2T00073938001 1 MESGGQYEngRYNPdYYKegthsvwnampnhhqtkedQHNALV--MNQKIMSILAERDAALKERDDALAAKQEALAVRDEALDLRDKALS 88 7888888778888889989999999999999888765556677..99******************************************* PP GAGA_bind 69 ernkalverdnkllalllvenslasalpvgvq 100 r++a++erd++l al+++e++l+ l+ + GSBRNA2T00073938001 89 LRDNAILERDSALSALQFREHNLNYILSRAKL 120 **********************9955544433 PP | |||||||
2 | GAGA_bind | 247 | 1.3e-75 | 141 | 286 | 153 | 300 |
GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242 + +k++k++k + k +++ +++v++++ ++ +++++s ++ln v++De+t+PvP+C+CtG+ r CYkWGnGGWqS+CCttt+S y GSBRNA2T00073938001 141 AAPSKRKKKRKPETRSKGKRVGEDHVASPG--KKCRKDWDSNVVGLNLVTFDETTMPVPMCTCTGTARHCYKWGNGGWQSSCCTTTLSLY 228 334455555555555555666677777777..579******************************************************* PP GAGA_bind 243 PLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 PLP+++++r++R++grKmS+++f++lL++La++G+dls pvDLkd+WA+HGtn+++ti GSBRNA2T00073938001 229 PLPQMPNKRHSRVGGRKMSGNVFSRLLSRLAGQGHDLSSPVDLKDYWARHGTNRYITI 286 *********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.2E-126 | 1 | 287 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 9.6E-86 | 22 | 286 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MESGGQYENG RYNPDYYKEG THSVWNAMPN HHQTKEDQHN ALVMNQKIMS ILAERDAALK 60 ERDDALAAKQ EALAVRDEAL DLRDKALSLR DNAILERDSA LSALQFREHN LNYILSRAKL 120 GASQSSHLPN PSPLSTVPHE AAPSKRKKKR KPETRSKGKR VGEDHVASPG KKCRKDWDSN 180 VVGLNLVTFD ETTMPVPMCT CTGTARHCYK WGNGGWQSSC CTTTLSLYPL PQMPNKRHSR 240 VGGRKMSGNV FSRLLSRLAG QGHDLSSPVD LKDYWARHGT NRYITIM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 150 | KRKKKRK |
2 | 146 | 151 | KKKRKP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00073938001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189521 | 0.0 | AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137623.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Refseq | XP_009138239.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Refseq | XP_009138877.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Refseq | XP_018508066.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Refseq | XP_018508091.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Refseq | XP_018508118.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Swissprot | F4JUI3 | 1e-154 | BPC5_ARATH; Protein BASIC PENTACYSTEINE5 | ||||
TrEMBL | A0A078HW26 | 0.0 | A0A078HW26_BRANA; BnaA01g05230D protein | ||||
STRING | Bra011886.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4090 | 26 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38910.2 | 1e-151 | basic pentacysteine 5 |
Publications ? help Back to Top | |||
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