PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073938001
Common NameGSBRNA2T00073938001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 288aa    MW: 32195.4 Da    PI: 9.8407
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073938001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind55.13.6e-1711201100
            GAGA_bind   1 mdddgsre..rnkg.yye...................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68 
                          m++ g++e  r  + yy+                   ++++l   +++++ms++aerda+++er+ al++k++a+a rd+a+  rdkal+
  GSBRNA2T00073938001   1 MESGGQYEngRYNPdYYKegthsvwnampnhhqtkedQHNALV--MNQKIMSILAERDAALKERDDALAAKQEALAVRDEALDLRDKALS 88 
                          7888888778888889989999999999999888765556677..99******************************************* PP

            GAGA_bind  69 ernkalverdnkllalllvenslasalpvgvq 100
                           r++a++erd++l al+++e++l+  l+ +  
  GSBRNA2T00073938001  89 LRDNAILERDSALSALQFREHNLNYILSRAKL 120
                          **********************9955544433 PP

2GAGA_bind2471.3e-75141286153300
            GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242
                           + +k++k++k +   k +++ +++v++++  ++ +++++s  ++ln v++De+t+PvP+C+CtG+ r CYkWGnGGWqS+CCttt+S y
  GSBRNA2T00073938001 141 AAPSKRKKKRKPETRSKGKRVGEDHVASPG--KKCRKDWDSNVVGLNLVTFDETTMPVPMCTCTGTARHCYKWGNGGWQSSCCTTTLSLY 228
                          334455555555555555666677777777..579******************************************************* PP

            GAGA_bind 243 PLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                          PLP+++++r++R++grKmS+++f++lL++La++G+dls pvDLkd+WA+HGtn+++ti
  GSBRNA2T00073938001 229 PLPQMPNKRHSRVGGRKMSGNVFSRLLSRLAGQGHDLSSPVDLKDYWARHGTNRYITI 286
                          *********************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.2E-1261287IPR010409GAGA-binding transcriptional activator
PfamPF062179.6E-8622286IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MESGGQYENG RYNPDYYKEG THSVWNAMPN HHQTKEDQHN ALVMNQKIMS ILAERDAALK  60
ERDDALAAKQ EALAVRDEAL DLRDKALSLR DNAILERDSA LSALQFREHN LNYILSRAKL  120
GASQSSHLPN PSPLSTVPHE AAPSKRKKKR KPETRSKGKR VGEDHVASPG KKCRKDWDSN  180
VVGLNLVTFD ETTMPVPMCT CTGTARHCYK WGNGGWQSSC CTTTLSLYPL PQMPNKRHSR  240
VGGRKMSGNV FSRLLSRLAG QGHDLSSPVD LKDYWARHGT NRYITIM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150KRKKKRK
2146151KKKRKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073938001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895210.0AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137623.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_009138239.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_009138877.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_018508066.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_018508091.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_018508118.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
SwissprotF4JUI31e-154BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A078HW260.0A0A078HW26_BRANA; BnaA01g05230D protein
STRINGBra011886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-151basic pentacysteine 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]