PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073434001
Common NameGSBRNA2T00073434001, LOC106433778
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 551aa    MW: 62495.5 Da    PI: 6.371
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073434001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-21114214198
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f kvl+ sd++++g +vl k++a e+       ++    s++++ +d +g +W++k++ r++++r+++t+GW+eF+k ++L +gD++vF 
  GSBRNA2T00073434001 114 FTKVLSASDTSTNGGFVLYKRHAIEClplldmsQLT--PSQEIIAKDIHGHEWSFKHTSRGTPKRHLFTSGWNEFAKGKKLVAGDSFVFL 201
                          89****************************965444..5669************************************************ PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                          +   +++e +v++ +
  GSBRNA2T00073434001 202 R--GENGESRVGISK 214
                          3..377777898865 PP

2Auxin_resp87.82.1e-29240319183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a +a+++k++F v+Y+Pr+  s+F+v+++k+++ +++k+s+G++f m+fe++d +e+r+ Gtvvgv+d+++ +W++S+WrsL+
  GSBRNA2T00073434001 240 ALNAIENKCMFVVFYKPRS--SQFIVNFDKFVDRVNNKFSIGSKFSMKFEGKDLNEIRYNGTVVGVRDFST-HWKDSEWRSLE 319
                          6799**************6..9**********************************************777.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-35105228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-28111221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-19113214No hitNo description
SMARTSM010197.7E-20114216IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337114216IPR003340B3 DNA binding domain
PfamPF023626.5E-19114213IPR003340B3 DNA binding domain
PfamPF065071.3E-26240318IPR010525Auxin response factor
PROSITE profilePS5174517.434439529IPR000270PB1 domain
SuperFamilySSF542774.51E-7440514No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MAGDQIMHAQ PEVLAIGETN NYLNDKLWKL CAGPLFDTPK IGEKLVASMD DELCQLKPIF  60
DIPSKICCNV FSINLKVEPS TNEIYAEVSL LPDTSDVEIP IPKNENNIQN INYFTKVLSA  120
SDTSTNGGFV LYKRHAIECL PLLDMSQLTP SQEIIAKDIH GHEWSFKHTS RGTPKRHLFT  180
SGWNEFAKGK KLVAGDSFVF LRGENGESRV GISKAAHQQR NIPTSLISKE SMHHSVVATA  240
LNAIENKCMF VVFYKPRSSQ FIVNFDKFVD RVNNKFSIGS KFSMKFEGKD LNEIRYNGTV  300
VGVRDFSTHW KDSEWRSLEV QWDEAATIPR PDKVSPWEIE LLLTHSSNIF KSDALKHKRQ  360
LEVHEFGSKM WAPTIYNEQM VQAMKEPSTT TATTSCRLFG VDLMVPAITK DPVEPIVSNK  420
KCKISKIFED EKVDHVQAKS RTKVHMEGVI ERTVDLTIFD GYNQLIDELE RLFDIKGELH  480
MHNKWKMFFI YNDGDMMILG DDPWPKFCNM AKEIFICSKE DVKIGIADNR FSEGDPTLTT  540
TILPPDVNNT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1121734913362Auxin response factor 1
4ldy_B1e-1121734913362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073434001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794860.0JN979486.1 Brassica rapa subsp. pekinensis auxin response factor 25 (ARF25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730059.10.0putative auxin response factor 15
SwissprotQ9LQE30.0ARFO_ARATH; Putative auxin response factor 15
TrEMBLA0A078HT500.0A0A078HT50_BRANA; Auxin response factor
STRINGBra027944.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.10.0auxin response factor 14
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]