PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00073199001 | ||||||||
Common Name | GSBRNA2T00073199001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 298aa MW: 33881.9 Da PI: 6.4313 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 101.1 | 6.5e-32 | 36 | 140 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ GSBRNA2T00073199001 36 FDKVVTPSDVGKLNRLVIPKQYAERYfpldSSTNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCv 125 89***************************966778999*************************************************443 PP SS..SEE..EEEEE- CS B3 86 gr..sefelvvkvfr 98 g+ ++ +l++ ++r GSBRNA2T00073199001 126 GDsgRDSRLFIDWRR 140 332466667777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-41 | 30 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.36E-30 | 33 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.36E-26 | 34 | 136 | No hit | No description |
Pfam | PF02362 | 4.1E-29 | 36 | 141 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.889 | 36 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-22 | 36 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MMMTNLSLTR EGEEEEEEEQ EEAKKPMEEV EREHMFDKVV TPSDVGKLNR LVIPKQYAER 60 YFPLDSSTNE KGLLLNFEDL TGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS 120 FQRCVGDSGR DSRLFIDWRR RLKVPDHPTS IAHFAAGSMF PRFYSFPTAT SYNLYNYQQP 180 RHHHHSGYNY PQIPREFGYG YLVDQRAVVA DPLVIESVPV MMHGGAQVSQ AVVGTAGKRL 240 RLFGVDMEEE SSSSGGSLPR GDASPSSSLF QLRLGSSSED DHFSKKGKSS LPFDLDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-76 | 30 | 144 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-76 | 30 | 144 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00073199001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232491 | 0.0 | AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631858.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1 | ||||
Swissprot | O82799 | 1e-154 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A078HW23 | 0.0 | A0A078HW23_BRANA; BnaC04g00580D protein | ||||
TrEMBL | A0A0D3BNP9 | 0.0 | A0A0D3BNP9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6C339 | 0.0 | A0A3P6C339_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g006900.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-148 | B3 family protein |