PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073107001
Common NameGSBRNA2T00073107001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 370aa    MW: 41750.8 Da    PI: 7.0285
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073107001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.3e-1089129444
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                          +k  rr+++NReAAr+sR+RKka +++Lee   +L++  ++
  GSBRNA2T00073107001  89 DKTKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 129
                          7999*************************987777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.001986144IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.33588130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-788130No hitNo description
PfamPF001701.8E-689128IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-790132No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
PfamPF141441.6E-28175249IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMSSSSSNTQ AVPFRDMAMY EPFQQLTGWD NTFNTITSNN HNNNNQTSST VARTEADDNN  60
KGNYTSLYNN SVEAEPSSNN DQGEVQINDK TKRRLAQNRE AARKSRLRKK AHVQQLEESR  120
LKLSQLEQEL VRARQQGLCV TSDATYLGPA GTMNTGIAAF EMEHKHWLEE QNKRVSEIRT  180
ALQAHISDVE LKMLVDVCLN HYANLFRMKA DAAKADVFFL ISGMWRTSTE RFFQWIGGFR  240
PSELLNVVMP YIEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE NIAVVESLNH  300
GGAQMASAME NLESLEGFVN QADHLRKQSL QQMSKVLTTR QAARGLLALG EYFHRLRALS  360
SLWAARPRN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073107001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9531060.0EU953106.1 Zea mays clone 1383078 transcription factor TGA4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110151.10.0PREDICTED: transcription factor TGA3 isoform X1
RefseqXP_009110152.10.0PREDICTED: transcription factor TGA3 isoform X2
RefseqXP_009110153.10.0PREDICTED: transcription factor TGA3 isoform X2
SwissprotQ392340.0TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A078HSC10.0A0A078HSC1_BRANA; BnaA08g20970D protein
STRINGBra016389.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.10.0TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  6. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]