PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073050001
Common NameGSBRNA2T00073050001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 122aa    MW: 14027.8 Da    PI: 9.5287
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073050001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-09771102154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++ ++  LA+ +gL+++q+ +WF N+R +
  GSBRNA2T00073050001  77 KWPYPTEGDKIALADATGLDQKQINNWFINQRKR 110
                          569*****************************88 PP
2ELK27.19.4e-103152122
                  ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                         +LK++LlrK+++ ++sLk EFs
  GSBRNA2T00073050001 31 DLKDRLLRKFGSGISSLKLEFS 52
                         69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011882.5E-43152IPR005539ELK domain
PfamPF037895.3E-63152IPR005539ELK domain
PROSITE profilePS512139.2023151IPR005539ELK domain
PROSITE profilePS5007112.17951114IPR001356Homeobox domain
SuperFamilySSF466895.99E-1952118IPR009057Homeodomain-like
SMARTSM003894.0E-1253118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-2756115IPR009057Homeodomain-like
CDDcd000862.33E-1060115No hitNo description
PfamPF059205.8E-1871110IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MFKDGAVSSD EELSGGDEIS QDGKQICEDR DLKDRLLRKF GSGISSLKLE FSKKKKKGKL  60
PREARQALLD WWSVHYKWPY PTEGDKIALA DATGLDQKQI NNWFINQRKR HWNQSENMPF  120
A*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073050001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110101.12e-82PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS67e-68KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A078HVR41e-83A0A078HVR4_BRANA; BnaA08g20510D protein
TrEMBLA0A397YFC15e-81A0A397YFC1_BRACM; Uncharacterized protein
TrEMBLM4DIM15e-81M4DIM1_BRARP; Uncharacterized protein
STRINGBra016348.1-P9e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-62KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]