PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072913001
Common NameGSBRNA2T00072913001, LOC106346177
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 442aa    MW: 49905 Da    PI: 5.8805
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072913001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52281551128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL   +++k++++ewyf+s  dkky +g r nrat++gyWkatgk
  GSBRNA2T00072913001  28 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGK 116
                          579************************999.99**************8544899999********************************* PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+e+ + + +  g+kktLvf++grap+g +t+Wvmheyrl
  GSBRNA2T00072913001 117 DREIRR-DVQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 155
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-6022180IPR003441NAC domain
PROSITE profilePS5100557.3728179IPR003441NAC domain
PfamPF023656.4E-2730155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGRESMAVVE SSPPSATAPG AAVSATSLAP GFRFHPTDEE LVSYYLKRKV LGKPVRFDAI  60
GEVDIYKHEP WDLAVFSRLK TRDQEWYFYS ALDKKYGNGA RMNRATNKGY WKATGKDREI  120
RRDVQILGMK KTLVFHSGRA PDGLRTNWVM HEYRLVDYET ESNGNLVQDA YVLCRIFHKN  180
NIGPPSGNRY APFMEEEWSD DRVALIPGVD VRVRAEPLPL ANGNNQMNQE IQPESKDLIN  240
INEPPRETTT QMDIELNHQE NNNSNRNDEI EEALKREETE EDERLPPPPP PVCVLNKEAP  300
LPLLQYKRRR QNESTRTTQD HSSSTTTTVD NTPTLVSNST AAAATNTAIS ALLEFSLMGI  360
SDKKENPKPL HKEASPPPAQ LPSPEEKLNV LKKEVHQMSV ERETFKLEMM SAEAMISILQ  420
SRIDALRQEN DELKKNSANG H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4761814167NO APICAL MERISTEM PROTEIN
1ut4_B1e-4761814167NO APICAL MERISTEM PROTEIN
1ut7_A1e-4761814167NO APICAL MERISTEM PROTEIN
1ut7_B1e-4761814167NO APICAL MERISTEM PROTEIN
3swm_A2e-4761817170NAC domain-containing protein 19
3swm_B2e-4761817170NAC domain-containing protein 19
3swm_C2e-4761817170NAC domain-containing protein 19
3swm_D2e-4761817170NAC domain-containing protein 19
3swp_A2e-4761817170NAC domain-containing protein 19
3swp_B2e-4761817170NAC domain-containing protein 19
3swp_C2e-4761817170NAC domain-containing protein 19
3swp_D2e-4761817170NAC domain-containing protein 19
4dul_A1e-4761814167NAC domain-containing protein 19
4dul_B1e-4761814167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.108730.0microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072913001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667530.0KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640887.10.0NAC domain-containing protein 13 isoform X1
SwissprotQ9SQY00.0NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A078HX700.0A0A078HX70_BRANA; BnaA01g31660D protein
TrEMBLA0A3P5ZCE80.0A0A3P5ZCE8_BRACM; Uncharacterized protein
STRINGBra034119.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.20.0NAC domain containing protein 52
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  5. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  6. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]