PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00072912001 | ||||||||
Common Name | GSBRNA2T00072912001, LOC106346178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 422aa MW: 47678.5 Da PI: 5.6534 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.4e-52 | 25 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL ++++++++ewyf+s dkky +g r nrat++gyWkatgk GSBRNA2T00072912001 25 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLRTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGK 113 579************************999.99**************8544888999********************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+e+ + + + g+kktLvf++grap+g +t+Wvmheyrl GSBRNA2T00072912001 114 DREIRR-DVQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 152 *****9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-60 | 19 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.316 | 25 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-27 | 27 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MGRESVVAVS SPATAPGAVV AATALAPGFR FHPTDEELVS YYLKRKVLGK PVRFDAIGEV 60 DIYKHEPWDL AVFSRLRTRD QEWYFYSALD KKYGNGARMN RATNKGYWKA TGKDREIRRD 120 VQILGMKKTL VFHSGRAPDG LRTNWVMHEY RLVDYETENN GNLVQDAYVL CRIFHKNNIG 180 PPSGNRYAPF IEEEWADDGV TLIPGVDVSL RAEPLPLANG NNQMSQNSIQ SPSKDFININ 240 EPPRETTTPM DIEVNHKNNH CDEEEEEALK REEADEDHER PPPPLCILNK EAPLPLLQYK 300 RRRQNDSSRT TQDHCSSTTT TVDNTPTAAV ATNTAISALL EFSLMGISEK KENHQPPLTP 360 LPSPEEKVND LQKEVHQMSV ERETFKLEMM SAEAMISILQ SRIDALRQEN DELKKNNANG 420 H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-47 | 24 | 178 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 24 | 178 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 24 | 178 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 24 | 178 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 24 | 178 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 24 | 178 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 24 | 178 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 24 | 178 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.7182 | 0.0 | microspore-derived embryo| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00072912001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966753 | 0.0 | KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013640888.1 | 0.0 | NAC domain-containing protein 71 | ||||
Swissprot | Q9SQY0 | 0.0 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A078HU22 | 0.0 | A0A078HU22_BRANA; BnaA01g31670D protein | ||||
STRING | Bra034118.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.2 | 0.0 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Entrez Gene | 106346178 |