PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00072750001 | ||||||||
Common Name | GSBRNA2T00072750001, LOC106372045, LOC106403005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 322aa MW: 34066.1 Da PI: 7.4651 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.7 | 1.6e-41 | 51 | 165 | 2 | 103 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss s+ s++ GSBRNA2T00072750001 51 PPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSRSSLSAAhl 140 789******************************************************************999755555555553333344 PP TCP 89 ................kaaksaakskksqks 103 + +++++ ++ GSBRNA2T00072750001 141 rttpsnyyfhspamaqH------HHQQQLHQ 165 45555555432222210......11111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.3E-41 | 55 | 175 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.008 | 57 | 111 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDPDPDHHQR PNFPLQLLDS SSSSSTSLAI IPSASSSEPN SDPNVLSKKP PPKRTSTKDR 60 HTKVEGRGRR IRMPAMCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN 120 FTSLNISLRS SRSSLSAAHL RTTPSNYYFH SPAMAQHHHQ QQLHQVRPKN ESDSCSSSQL 180 VDHNQMGNYL VQSTAGSLPT SQTPATAPFW SSGDNTQNLW AFHHSGDVYN TSSGGGGGGG 240 GAGGGGGVHL MNFPAPFALF SGQPLASGYG GGGGGGGEHN HYGVLSALNA AYRPVQETAN 300 QQNHGDHHHN HQEDGSTSHH S* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells (PubMed:25527103). Expressed in young proliferating tissues (PubMed:21668538). Expressed in developing embryos, and seeds during germination (PubMed:25655823). {ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:25527103, ECO:0000269|PubMed:25655823}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP14, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in developing leaf blade and specific floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Involved in gynoecium and silique development. Modulates the development of the different tissues of the gynoecium through its participation in auxin and cytokinin responses. Modulates the expression of the cytokinin-responsive genes ARR7 and ARR15. May repress the expression of the auxin biosynthetic genes YUC1 and YUC4 (PubMed:26303297). Acts as negative regulator of anthocyanin accumulation under high light conditions. Modulates the expression of transcription factors involved in the induction of anthocyanin biosynthesis genes (PubMed:26574599). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). {ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:26303297, ECO:0000269|PubMed:26574599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00072750001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:21183706). Induced during seed imbibition (PubMed:25655823). Induced by cytokinin (PubMed:26303297). {ECO:0000269|PubMed:21183706, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:26303297}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353330 | 0.0 | AK353330.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-O23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105523.1 | 0.0 | PREDICTED: transcription factor TCP15-like | ||||
Refseq | XP_013667627.1 | 0.0 | transcription factor TCP15-like | ||||
Refseq | XP_013699288.1 | 0.0 | transcription factor TCP15-like | ||||
Swissprot | Q9C9L2 | 1e-148 | TCP15_ARATH; Transcription factor TCP15 | ||||
TrEMBL | A0A078JRL2 | 0.0 | A0A078JRL2_BRANA; BnaAnng26720D protein | ||||
TrEMBL | A0A3P6BK07 | 0.0 | A0A3P6BK07_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CJM3 | 0.0 | M4CJM3_BRARP; Uncharacterized protein | ||||
STRING | Bra004407.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12965 | 18 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 1e-114 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106372045 | 106403005 |
Publications ? help Back to Top | |||
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