PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00072591001

Common Name

GSBRNA2T00072591001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 297aa MW: 33337.7 Da PI: 10.0472

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00072591001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	349.2	9.2e-107	1	296	1	301
GAGA_bind 1 mdddgsrernkgyye...........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 mdd g+r+ g+++ + ++ ++ +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd+ GSBRNA2T00072591001 1 MDDGGHRD--NGWHKashgkwmmqqhQ-PQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDS 87 88888854..44444455677776431.344444556*************************************************** PP GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169 +l+al++++ s++ t+ ++ + ++ q++++++e+re+e +++p+ ++++ +++k++k+ + +k+ k+++k+kk GSBRNA2T00072591001 88 ALAALQYRDSSMS------------TSRQHQPHIHHMLQVTENTYETRETE--TSPPLPTKPKRGRKAKEPKAAAASKR-GPKTQRKVKK 162 ***888733............333333333344789**99998..56677787788888888774444333.3444556677 PP GAGA_bind 170 ksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258 ++e++ k +++ + sk++++ ++ +ln v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++gr GSBRNA2T00072591001 163 ENEDDLTKLMFDEEATGSKSDWRGQETvGLNRVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGR 252 67777777777777789**998649********************************************************* PP GAGA_bind 259 KmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301 KmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+ GSBRNA2T00072591001 253 KMSGSAFSKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 296 **************88*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	8.8E-101	1	296	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	5.1E-136	1	296	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDDGGHRDNG WHKASHGKWM MQQHQPQQHQ PSMKQVMSII AERDAAIQER NLAISEKKAA 60 VAERDMAFLQ RDTAIAERNN AIMERDSALA ALQYRDSSMS TSRQHQPHIH HMLQVTENTY 120 ETRETETSPP LPTKPKRGRK AKEPKAAAAS KRGPKTQRKV KKENEDDLTK LMFDEEATGS 180 KSDWRGQETV GLNRVVYDET TMPPPVCSCT GVLRQCYKWG NGGWQSSCCT TTLSMHPLPA 240 LPNKKHARVG GRKMSGSAFS KLLSRLAAEG HHDLSNPVDL KDHWAKHGTN RYITIK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10021	1e-160	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00072591001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022546958.1	0.0	protein BASIC PENTACYSTEINE6-like isoform X2
Refseq	XP_022546960.1	0.0	protein BASIC PENTACYSTEINE6-like isoform X2
Swissprot	Q8L999	1e-161	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A078HWN9	0.0	A0A078HWN9_BRANA; BnaA09g38320D protein
STRING	Bra007518.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6169	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.3	1e-94	basic pentacysteine 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]