PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072352001
Common NameGSBRNA2T00072352001, LOC106432008
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 294aa    MW: 33319.3 Da    PI: 4.8725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072352001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.7e-21148198255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  GSBRNA2T00072352001 148 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 198
                          8********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.85E-33147206No hitNo description
Gene3DG3DSA:3.30.730.103.1E-33147207IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-23148208IPR016177DNA-binding domain
SMARTSM003801.8E-37148212IPR001471AP2/ERF domain
PfamPF008476.6E-15148198IPR001471AP2/ERF domain
PROSITE profilePS5103224.368148206IPR001471AP2/ERF domain
PRINTSPR003671.1E-10149160IPR001471AP2/ERF domain
PRINTSPR003671.1E-10172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MANPSEASAL RFIEKHLLDE LSPVATDRWM IHESAATESS SDSSPTIFGS PAAPIEFSEF  60
ENKPEIIDLS TPRLISSPFE LDSEVSVSDF DFKPSYQPRN QFEPEIKTQS NRKQQLKISV  120
PTKTEWIQFD PQPEVTKPSQ TIAEEKKHYR GVRQRPWGKF AAEIRDPNKR GSRIWLGTFD  180
TAIEAARAYD EAAFRLRGSK AILNFPLEVG KWKTCSDADG EKKRKRDDEL EDVTVVEKVS  240
KTEQNVNGKE TFPLVKSDLT ELYDWDLTGF LNFPLLSPLS PRPSFNYSEL TVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-30147209163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-30147209466ATERF1
3gcc_A2e-30147209466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.248680.0root
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072352001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553470.0AC155347.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH093K03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728299.10.0ethylene-responsive transcription factor 5
SwissprotO803411e-138EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A078HT650.0A0A078HT65_BRANA; BnaA09g18210D protein
TrEMBLA0A397Y5W20.0A0A397Y5W2_BRACM; Uncharacterized protein
STRINGBra017493.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-113ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]