PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00072327001 | ||||||||
Common Name | GSBRNA2T00072327001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 1059aa MW: 117202 Da PI: 6.774 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.2e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F GSBRNA2T00072327001 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFV 213 99*****************************954.4444.48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ GSBRNA2T00072327001 214 --RDEKSQLTLGIRRA 227 ..45677789999997 PP | |||||||
2 | Auxin_resp | 118.6 | 5.2e-39 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F++++nPras+seFvv+++k++kal+ +vs+GmRf+m+feted+ rr++Gtv+g+sdldpvrW++S+Wr+L+ GSBRNA2T00072327001 252 AAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQ 334 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-44 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-41 | 120 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.47E-21 | 125 | 226 | No hit | No description |
Pfam | PF02362 | 2.0E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-24 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.492 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.3E-34 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-9 | 928 | 1016 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.001 | 930 | 1015 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.07E-8 | 944 | 1008 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1059 aa Download sequence Send to blast |
MKAPSNGFHP NPTEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ 60 TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKINR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS 240 SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF 300 ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP 360 FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM 420 SMQQNNPLSA GAAAATTHLP SSYNLPNNFA PNDHSKLLNF QSPNLSPANT QFNKPNMVSH 480 ISQQMQAQPA MVQSQQQQQQ QQQQQLQQQV QMSHQQLQQQ HHQHQQQGGY NSGSVNNGVS 540 VVSNQVSCQN QSAGFTQSQL QQQSMLSNGA KMTHQNMVSA GNKGSSQMTA QELQFQQQLE 600 LHNSTQLLRN QQEQSSMHSL QQNPQQLQMQ QQQSSKPSPS QQLQLQLLQK LQQQQQLTPP 660 PVSSSSQPQL SSLQQTQSHQ LQQLLSSQNQ QPLPQSNNNS FMQPPQIQAS HHQQQGYMNN 720 NKPIVRSQSG HIDGEAPSCS TSPSANNTGH GNVSPTNFLS RNQQQGQGVS VPASDPVQQG 780 MVNLKSAGEQ FKFKAAVTDQ IGVTTAGTTY CPDVVVGPGQ QQQQTFPLPS FGFDGDLQQS 840 QHPRNSLAFA GNIEAVNPDA LYSQKDFQNL VVPNYGNAPR DIETELSSAS QSFGIPSIPF 900 KSGGSNEIGG INDSGIMNGG IWPNQAQRMR TYTKVQKRGS VGRSIDVTRY SGYEELRNDL 960 ARMFGIEGQL EDPQISDWKL VYTDHENDIL LVGDDPWEEF VNCVQNVKIL SSAEVQQMSL 1020 DGDLAAIPTT NQACSETDSG NAWKVHYEDT SAAASFNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-171 | 16 | 355 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.7844 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00072327001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979484 | 0.0 | JN979484.1 Brassica rapa subsp. pekinensis auxin response factor 19-2 (ARF19-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586633.1 | 0.0 | PREDICTED: auxin response factor 19 isoform X1 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A078HR47 | 0.0 | A0A078HR47_BRANA; Auxin response factor | ||||
STRING | Bo5g027250.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |