PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00072057001 | ||||||||
Common Name | GSBRNA2T00072057001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 350aa MW: 39028.4 Da PI: 10.1167 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.2 | 4.7e-15 | 271 | 326 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevakl 59 +r++r++kNRe+A rsR+RK+a++ eLe +v++L+++N++L +k++e ++k+ ++l GSBRNA2T00072057001 271 RRQKRMIKNRESAARSRARKQAYTLELEAEVAQLKEQNEELqRKQVEIIEKQKKQL 326 69*************************************99445566666665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.7E-14 | 267 | 332 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.921 | 269 | 314 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 8.65E-25 | 271 | 325 | No hit | No description |
SuperFamily | SSF57959 | 1.06E-10 | 271 | 315 | No hit | No description |
Pfam | PF00170 | 6.0E-13 | 271 | 328 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.5E-14 | 271 | 326 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 274 | 289 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGSQFNFVDD AKQPALGAGV PLTRQNSVFS LTFDEFQNSW GGGVGKDFGS MNMDELLKNI 60 WTAEESHSIM ANNTREIGVG GGLQRQGSIT LPRTISQKRV DDVWKELMKD DDAGSGGGGA 120 SGVPQRQQTL GEMTLEEFLV RAGVVREEPQ QVERKVHQPQ QLIQKQQDVA FPKQSTIAFS 180 NTVDLVNRSQ PPTQEVKPSV LGVRDRPMNN NNLLQAVDFK TGVTVAAVSP GSQMSPELTP 240 KSNMDASLSP VPYMFGRVRK TGAVLEKVIE RRQKRMIKNR ESAARSRARK QAYTLELEAE 300 VAQLKEQNEE LQRKQVEIIE KQKKQLLEPM RQPWGCKRQC LRRTLTGPW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14256 | 1e-178 | flower| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:11884679}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00072057001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX122893 | 1e-175 | JX122893.1 Brassica napus ABA-responsive element binding factor 3 (ABF3.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117671.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
Refseq | XP_009117730.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
Swissprot | Q9M7Q3 | 0.0 | AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
TrEMBL | A0A078JS33 | 0.0 | A0A078JS33_BRANA; BnaAnng26550D protein | ||||
STRING | Bra011485.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34000.2 | 1e-172 | abscisic acid responsive elements-binding factor 3 |