PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071997001
Common NameGSBRNA2T00071997001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 418aa    MW: 47922.1 Da    PI: 7.2362
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071997001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-2089129545
                          SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                          +   rq t++kR+ngi+KKA+ELS+LCd++v +++fs+ gk
  GSBRNA2T00071997001  89 SINARQATYCKRKNGIMKKAKELSILCDIDVVLLMFSPAGK 129
                          55679*********************************997 PP
2K-box14.61.4e-062212534779
                K-box  47 slkeLqqLeqqLekslkkiRskKnellleqiee 79 
                          s+ +LqqLe+ + +sl +iR +K+++l  q ++
  GSBRNA2T00071997001 221 SIDDLQQLENSIRQSLYQIRVHKENVLQHQQQQ 253
                          689************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.51177129IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-2777136IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-2378169IPR002100Transcription factor, MADS-box
CDDcd002668.25E-2378160No hitNo description
PRINTSPR004045.6E-157999IPR002100Transcription factor, MADS-box
PfamPF003191.2E-1891130IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-1599114IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-15114135IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MRRSIPQFPI FKLSIQTLIS DFGGHTCRLN RKPISSLSFT ILLPLLSFIF FLPHKETVFP  60
FSLGIRFFLF LFLLCRMGRV KLKIKKLDSI NARQATYCKR KNGIMKKAKE LSILCDIDVV  120
LLMFSPAGKP SLCTGEHSIG EVIAKFSQLA PQERAKRKLD NLEALKKTFM KLDHDVNISE  180
FLERSKPTVE VVSEQVKFLQ KHLSEIHTRL SYWTEVEKVD SIDDLQQLEN SIRQSLYQIR  240
VHKENVLQHQ QQQVMSIECK NELQSDIDLD FGIDIEQQLE NFSWVRTDEN MKAPLKEEED  300
PNLQFYHTYK DLTCSASSSL ESYSGLFGIK TPKLETGGIP GTSSDPNVQY SNLSFLNDPK  360
LQQLAEWNLL GSPADYYVSQ ILEASYRPQF GGNWPSSEMS NYPFTVFDDP LLSRPNL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071997001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590420.10.0PREDICTED: developmental protein SEPALLATA 1 isoform X2
SwissprotQ1PFA42e-84AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A078HU970.0A0A078HU97_BRANA; BnaC06g30770D protein
STRINGBo6g109050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-172AGAMOUS-like 94
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]