PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071676001
Common NameGSBRNA2T00071676001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 325aa    MW: 36935.7 Da    PI: 8.7177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071676001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.92.8e-55171521128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratks 80 
                          lppGfrFhPtdeel+++yL++kv + ++++ ++i evd++k+ePw+Lp           k+k +ekewyfF+ rd+ky+tg r+nrat++
  GSBRNA2T00071676001  17 LPPGFRFHPTDEELITHYLHNKVLNIDFSA-KAIGEVDLNKAEPWELPYsyvcwtcfsyKAKMGEKEWYFFCVRDRKYPTGLRTNRATQA 105
                          79**************************99.88***************55899**99887778999************************ PP

                  NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          gyWkatgkdke+++ +++lvg+kktLvfy+grapkg+kt+Wvmheyrl
  GSBRNA2T00071676001 106 GYWKATGKDKEIFR-GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 152
                          **************.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6213177IPR003441NAC domain
PROSITE profilePS5100558.16217177IPR003441NAC domain
PfamPF023651.3E-2918152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEAFGGFHKE DDEQMVLPPG FRFHPTDEEL ITHYLHNKVL NIDFSAKAIG EVDLNKAEPW  60
ELPYSYVCWT CFSYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG  120
KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSPHN LPKTAKNEWV ICRVFHKTAG  180
GKKIPISTLM QIGSYGGSGL PPLTDSSPCN NTTKNEQTYV PCFSNQTETR GTLLNYFSNN  240
PALSSIPLYQ PHSLHVSDPV LTQEQSVSQA MFENNRRQSF KTLSISQETG VSNTDIEFGR  300
RGMDHQEVPS SSTGPVDLEP FWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-541418314171NO APICAL MERISTEM PROTEIN
1ut4_B5e-541418314171NO APICAL MERISTEM PROTEIN
1ut7_A5e-541418314171NO APICAL MERISTEM PROTEIN
1ut7_B5e-541418314171NO APICAL MERISTEM PROTEIN
3swm_A4e-541418317174NAC domain-containing protein 19
3swm_B4e-541418317174NAC domain-containing protein 19
3swm_C4e-541418317174NAC domain-containing protein 19
3swm_D4e-541418317174NAC domain-containing protein 19
3swp_A4e-541418317174NAC domain-containing protein 19
3swp_B4e-541418317174NAC domain-containing protein 19
3swp_C4e-541418317174NAC domain-containing protein 19
3swp_D4e-541418317174NAC domain-containing protein 19
4dul_A5e-541418314171NAC domain-containing protein 19
4dul_B5e-541418314171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.271911e-134seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071676001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667570.0KC966757.1 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303019.10.0NAC domain-containing protein 100-like
SwissprotQ9FLR30.0NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A078HQ990.0A0A078HQ99_BRANA; BnaAnng06380D protein
STRINGBra028685.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.10.0NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]