PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00071676001 | ||||||||
Common Name | GSBRNA2T00071676001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 36935.7 Da PI: 8.7177 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.9 | 2.8e-55 | 17 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratks 80 lppGfrFhPtdeel+++yL++kv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++ GSBRNA2T00071676001 17 LPPGFRFHPTDEELITHYLHNKVLNIDFSA-KAIGEVDLNKAEPWELPYsyvcwtcfsyKAKMGEKEWYFFCVRDRKYPTGLRTNRATQA 105 79**************************99.88***************55899**99887778999************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatgkdke+++ +++lvg+kktLvfy+grapkg+kt+Wvmheyrl GSBRNA2T00071676001 106 GYWKATGKDKEIFR-GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 152 **************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-62 | 13 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.162 | 17 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-29 | 18 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEAFGGFHKE DDEQMVLPPG FRFHPTDEEL ITHYLHNKVL NIDFSAKAIG EVDLNKAEPW 60 ELPYSYVCWT CFSYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG 120 KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSPHN LPKTAKNEWV ICRVFHKTAG 180 GKKIPISTLM QIGSYGGSGL PPLTDSSPCN NTTKNEQTYV PCFSNQTETR GTLLNYFSNN 240 PALSSIPLYQ PHSLHVSDPV LTQEQSVSQA MFENNRRQSF KTLSISQETG VSNTDIEFGR 300 RGMDHQEVPS SSTGPVDLEP FWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-54 | 14 | 183 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-54 | 14 | 183 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-54 | 14 | 183 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-54 | 14 | 183 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-54 | 14 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-54 | 14 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-54 | 14 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-54 | 14 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-54 | 14 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-54 | 14 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-54 | 14 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-54 | 14 | 183 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-54 | 14 | 183 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-54 | 14 | 183 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.27191 | 1e-134 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00071676001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966757 | 0.0 | KC966757.1 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001303019.1 | 0.0 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLR3 | 0.0 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A078HQ99 | 0.0 | A0A078HQ99_BRANA; BnaAnng06380D protein | ||||
STRING | Bra028685.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 0.0 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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