PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071638001
Common NameGSBRNA2T00071638001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 253aa    MW: 27036 Da    PI: 6.1595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071638001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-091156346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          W+ e+d  + +a++ +  +    W++Ia+ ++ g++ +q+k+++  
  GSBRNA2T00071638001 11 VWSREDDIAFERAIASYTDEsdeKWEKIAADVP-GKSVEQIKEHYEV 56
                         6*****************99*************.**********965 PP
2Myb_DNA-binding42.31.7e-1388132347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  GSBRNA2T00071638001  88 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 132
                          6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.951762IPR017884SANT domain
SMARTSM007176.6E-10860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-51057IPR009057Homeodomain-like
PfamPF002492.8E-81155IPR001005SANT/Myb domain
CDDcd001675.01E-91258No hitNo description
SuperFamilySSF466893.38E-101265IPR009057Homeodomain-like
PROSITE profilePS5129414.69581137IPR017930Myb domain
SuperFamilySSF466894.07E-1685138IPR009057Homeodomain-like
SMARTSM007179.9E-1085135IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.5E-1787135IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-1088131IPR009057Homeodomain-like
PfamPF002492.1E-1188132IPR001005SANT/Myb domain
CDDcd001674.92E-1088133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTVEEVSDGS VWSREDDIAF ERAIASYTDE SDEKWEKIAA DVPGKSVEQI KEHYEVLVED  60
VSRIESGCVP LPAYNSPQGG SGNSHGIAWT EDEHRLFLLG LDKYGKGDWR SISRNFVVTR  120
TPTQVASHAQ KYFIRLNSMN KERRRTSIHD ITSVGDADVS TPQGPITGQN NNNNGSAGAV  180
AGGGNKPAKQ GVSQQPTPGP SVYGAPSIGP QPVVGTPVNL PAPPHMAFAA PVPGSVVPQM  240
PYTVPRTPTA HR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15979878RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.144081e-120seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071638001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125735.11e-160PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-143SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A078HSM60.0A0A078HSM6_BRANA; BnaAnng06040D protein
STRINGBra028654.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-137MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]