PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00071498001

Common Name

GSBRNA2T00071498001, LOC106348132

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 898aa MW: 100066 Da PI: 7.1003

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00071498001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	8.9e-29	601	651	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ GSBRNA2T00071498001 601 EKTIGLEVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRKIKKV 651 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	590	671	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-24	604	651	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-24	787	881	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.2E-23	792	878	No hit	No description
SMART	SM00666	2.8E-28	794	879	IPR000270	PB1 domain
PROSITE profile	PS51745	28.839	794	879	IPR000270	PB1 domain
CDD	cd06407	4.81E-40	796	878	No hit	No description
Pfam	PF00564	4.0E-19	796	878	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MEGGSGGGHG GFLPNSSFGA FSETATNMDF MDELFFDGCW LETTDGKSLK QTTPTNMNDN 60 NNSFLYETER KFPQITPGSL KIEDLTDQPT NQVPSDHSAA MSSTQAEKFL LEETERGKRW 120 WIAPRTRQGP SSSVKDRLVQ AIKGLNEAVQ DKDSLIQIWV PIQQEGKNFL TTLEQPHSFN 180 PKHLSLKRYR DASVAYNFLA DEDSKESVGL PGRVFLGKLP EWTPDVRFFR SEEYPRIKEA 240 QKCDVRGSLA LPVFERGSGI CLGVVEIVRT TQKMNYKPEL ENICKALEAV NLRSSENLKS 300 PSSEFLQVYN QFYHAALPEV SNFLASVCRS YDLPLALTWA PCARQEGRGG SRHSDENFSE 360 CVSTVDSACF VLDQQSYHFQ VACSEHHLLQ GEGIVGKAFR RTKLFFVPEV TTFSKTNYSL 420 AHHAKISGLH AALAVPLKNK FNGSVEFVLE FFFPKLCLDT EAQQDMLKSL SVTLQNDFRS 480 LNLVIDKELE LEVVFPVREE LLFSEKPLPL EPFPLEEISQ EDSSWISHMI KANEKGKGVS 540 LSWEYQKEEP KEEFMLTSGW DNNNQIGLGH GHSSFDSASF GVGQSLLGSR RQGEKRRTKT 600 EKTIGLEVLR QYFAGSLKDA AKNIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL 660 VIDSVQGVQG SIQLDSFYTS FPELSSQNVS GTGTGTYFKN AQTENGVSAQ GIASKSPPSS 720 SCSHSSGSST CCSTEANNTA NTLTTLMAEN AGEILKRARS EVKLHTMEET KPISRTRSHK 780 TFSQHPLSLK AGGASKVKAT FGEAKVRFTL LPTWGFRELR HEIARRFNID NNNIATFDLK 840 YLDDDKEWVL LTCEADLEEC IDIYRSSQSR TIKISVHEAS QLKLRGSFGS TGTGPSL*

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MEGGSGGGHG GFLPNSSFGA FSETATNMDF MDELFFDGCW LETTDGKSLK QTTPTNMNDN  60
NNSFLYETER KFPQITPGSL KIEDLTDQPT NQVPSDHSAA MSSTQAEKFL LEETERGKRW  120
WIAPRTRQGP SSSVKDRLVQ AIKGLNEAVQ DKDSLIQIWV PIQQEGKNFL TTLEQPHSFN  180
PKHLSLKRYR DASVAYNFLA DEDSKESVGL PGRVFLGKLP EWTPDVRFFR SEEYPRIKEA  240
QKCDVRGSLA LPVFERGSGI CLGVVEIVRT TQKMNYKPEL ENICKALEAV NLRSSENLKS  300
PSSEFLQVYN QFYHAALPEV SNFLASVCRS YDLPLALTWA PCARQEGRGG SRHSDENFSE  360
CVSTVDSACF VLDQQSYHFQ VACSEHHLLQ GEGIVGKAFR RTKLFFVPEV TTFSKTNYSL  420
AHHAKISGLH AALAVPLKNK FNGSVEFVLE FFFPKLCLDT EAQQDMLKSL SVTLQNDFRS  480
LNLVIDKELE LEVVFPVREE LLFSEKPLPL EPFPLEEISQ EDSSWISHMI KANEKGKGVS  540
LSWEYQKEEP KEEFMLTSGW DNNNQIGLGH GHSSFDSASF GVGQSLLGSR RQGEKRRTKT  600
EKTIGLEVLR QYFAGSLKDA AKNIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL  660
VIDSVQGVQG SIQLDSFYTS FPELSSQNVS GTGTGTYFKN AQTENGVSAQ GIASKSPPSS  720
SCSHSSGSST CCSTEANNTA NTLTTLMAEN AGEILKRARS EVKLHTMEET KPISRTRSHK  780
TFSQHPLSLK AGGASKVKAT FGEAKVRFTL LPTWGFRELR HEIARRFNID NNNIATFDLK  840
YLDDDKEWVL LTCEADLEEC IDIYRSSQSR TIKISVHEAS QLKLRGSFGS TGTGPSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00071498001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572810.1	0.0	protein NLP2-like
Refseq	XP_022572811.1	0.0	protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A078HS38	0.0	A0A078HS38_BRANA; BnaA03g53210D protein
STRING	Bra017705.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Entrez Gene	106348132

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]