PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071285001
Common NameGSBRNA2T00062878001, GSBRNA2T00071285001, LOC106345461, LOC106352827
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family S1Fa-like
Protein Properties Length: 77aa    MW: 8144.84 Da    PI: 10.7332
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071285001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA138.31.6e-43876270
                 S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                         ++a++eakGlnPGlivllvvgg+l+vflv+ny++yvyaqknlPPrkkkPvskkklkreklkqGv+vPGe
  GSBRNA2T00071285001  8 GKAAAEAKGLNPGLIVLLVVGGPLVVFLVANYVMYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 76
                         57899***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.4E-381276IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MDGEGFAGKA AAEAKGLNPG LIVLLVVGGP LVVFLVANYV MYVYAQKNLP PRKKKPVSKK  60
KLKREKLKQG VPVPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.41351e-122seed
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071285001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892693e-80AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103859.11e-45PREDICTED: DNA-binding protein S1FA1
RefseqXP_013590178.11e-45PREDICTED: DNA-binding protein S1FA1
RefseqXP_013640119.11e-45DNA-binding protein S1FA1
RefseqXP_013647922.11e-45DNA-binding protein S1FA1
SwissprotQ423371e-23S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A078JPS23e-44A0A078JPS2_BRANA; BnaAnng24190D protein
TrEMBLA0A0D3CTK93e-44A0A0D3CTK9_BRAOL; Uncharacterized protein
TrEMBLA0A397YNB93e-44A0A397YNB9_BRACM; Uncharacterized protein
TrEMBLA0A3P6GQR73e-44A0A3P6GQR7_BRAOL; Uncharacterized protein
STRINGBo6g067310.15e-45(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]