PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00070582001 | ||||||||
Common Name | GSBRNA2T00070582001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GeBP | ||||||||
Protein Properties | Length: 194aa MW: 22208.5 Da PI: 10.0102 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 84.7 | 1.2e-26 | 1 | 72 | 19 | 97 |
DUF573 19 lidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +idfk++tgksp+dd++ y+++kksisf+vsk+q+++Kir+L+kK+ +k+k sf+k+hdqk++ l++ iWg GSBRNA2T00070582001 1 MIDFKNDTGKSPYDDTNVYYDYIKKSISFEVSKNQFMDKIRSLRKKYIGKEKP-------SFTKPHDQKSYRLCQYIWG 72 9***********************************************99876.......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.7E-19 | 1 | 72 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MIDFKNDTGK SPYDDTNVYY DYIKKSISFE VSKNQFMDKI RSLRKKYIGK EKPSFTKPHD 60 QKSYRLCQYI WGPDGMGLES AVKSNGASKK SQKKTKKLDS VKQELSFGAS PNGKTHDWFE 120 NSFLVKGIAG FGVDEHYVKQ RWSLVPVETK KKVEEKLKLL QAKEIEFVLQ KTEVLHEVTT 180 MIAEASKNKP LDI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.11961 | 1e-121 | flower| root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00070582001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013716592.1 | 1e-117 | probable transcription factor At1g61730 | ||||
Swissprot | Q9SYA9 | 4e-83 | STKLD_ARATH; Probable transcription factor At1g61730 | ||||
TrEMBL | A0A078FI80 | 1e-139 | A0A078FI80_BRANA; BnaA09g13630D protein | ||||
STRING | Bra027078.1-P | 1e-115 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 9e-67 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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