PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070487001
Common NameGSBRNA2T00070487001, LOC106394814
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 434aa    MW: 48323.2 Da    PI: 4.971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070487001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3074.5e-94314192373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                          ++lLl+cA+a++s+d++l+q++++ +++las+dgd++qRla+ +++AL +r a +++  ++ l  +s+++e+ +  ++  l +f++++P+
  GSBRNA2T00070487001  31 EQLLLHCANAIESNDATLTQQTIWVINNLASSDGDSTQRLASSLLRALISRAATKSPA-FSFLsVASASHETLHRFSVIELAAFVDLTPW 119
                          79***************************************************95555.555514444444335555555555******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesg...skeeleetgerLakfAeelg 173
                          ++f++++aN aIl+av+g + vHi+D+++++++Q p+L++++a++     ++pp l++T+v s+++       ++ee+g +L +fA++ +
  GSBRNA2T00070487001 120 HRFGFIAANAAILDAVKGYSSVHIVDLSLTHCMQIPTLIDSMATKLinkeQPPPLLKLTVVLSESPPpplLGISYEELGLKLVSFAATRN 209
                          *******************************************99887778899*********88878888999**************** PP

                 GRAS 174 vpfefnvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFler 256
                          v +ef+++   +++ l++l +e+Lr++p   +Eal+Vn++++lh+++++++s +s  r+ +Lk +++l+P++v+++e++ad +s++F +r
  GSBRNA2T00070487001 210 VAMEFRIIyssYSDGLSSL-IEQLRLDPlvcNEALVVNCHMMLHYIPNDTLSYSSpSRSLFLKELRDLNPTMVTLIEEDADFTSSNFIAR 298
                          *******955444556666.9********************************9988999****************************** PP

                 GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                          + + ++y++  +d+ ++ l   se+r+++E+  +g++i nvva+egaer+er e +++W er++ea F+ v ++e +a +++++l++++ 
  GSBRNA2T00070487001 299 LRSLFNYMWIPYDTADTFLTCGSEQRQWYEAD-IGWKIDNVVAKEGAERVERLEPKSRWFERMREADFTGVGFGEAVAREVQTMLEEHAa 387
                          ********************************.********************************************************9 PP

                 GRAS 346 sdgyrve....eesgslvlgWkdrpLvsvSaW 373
                          ++g++ +    ++ + +vl+Wk++++v++SaW
  GSBRNA2T00070487001 388 GWGMKRDvddsDDVERFVLTWKGHSVVFASAW 419
                          999887755544578899************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.5574395IPR005202Transcription factor GRAS
PfamPF035141.5E-9131419IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MNKAMILNPT RPVWPGFSSS KSLCGDANCM EQLLLHCANA IESNDATLTQ QTIWVINNLA  60
SSDGDSTQRL ASSLLRALIS RAATKSPAFS FLSVASASHE TLHRFSVIEL AAFVDLTPWH  120
RFGFIAANAA ILDAVKGYSS VHIVDLSLTH CMQIPTLIDS MATKLINKEQ PPPLLKLTVV  180
LSESPPPPLL GISYEELGLK LVSFAATRNV AMEFRIIYSS YSDGLSSLIE QLRLDPLVCN  240
EALVVNCHMM LHYIPNDTLS YSSPSRSLFL KELRDLNPTM VTLIEEDADF TSSNFIARLR  300
SLFNYMWIPY DTADTFLTCG SEQRQWYEAD IGWKIDNVVA KEGAERVERL EPKSRWFERM  360
READFTGVGF GEAVAREVQT MLEEHAAGWG MKRDVDDSDD VERFVLTWKG HSVVFASAWV  420
PMNRVDGCSH VEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-471542118420Protein SHORT-ROOT
5b3h_E2e-471542118420Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070487001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596276.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_013690820.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A078FIM70.0A0A078FIM7_BRANA; BnaC07g15890D protein
TrEMBLA0A0D3D8470.0A0A0D3D847_BRAOL; Uncharacterized protein
STRINGBo7g063640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]