PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070447001
Common NameGSBRNA2T00070447001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 158aa    MW: 17671.9 Da    PI: 9.9228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070447001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-182372255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ykG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  GSBRNA2T00070447001 23 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 72
                         59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.7872380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-302381IPR001471AP2/ERF domain
SMARTSM003802.4E-382386IPR001471AP2/ERF domain
PRINTSPR003676.7E-92435IPR001471AP2/ERF domain
CDDcd000181.47E-262482No hitNo description
SuperFamilySSF541711.63E-212481IPR016177DNA-binding domain
PfamPF008474.6E-122472IPR001471AP2/ERF domain
PRINTSPR003676.7E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEGGGVAANV AVSGTTTRKR ERPYKGIRMR KWGKWVAEIR EPNKRSRLWL GSYSTPEAAA  60
RAYDTAVFYL RGPTARLNFP ELLTGEKFTE EDMSAATIRK KATEVGAQVD ALGSAVLDNR  120
HRVFDEKRLK SGGWLLERVD LNKLPDPESS DEDWESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-152480663ATERF1
3gcc_A3e-152480663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.52560.0flower| seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070447001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2498141e-112DQ249814.1 Brassica rapa subsp. pekinensis cDREB mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595304.11e-105PREDICTED: ethylene-responsive transcription factor ERF010
SwissprotQ9FH943e-89ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A078FIL61e-110A0A078FIL6_BRANA; BnaC07g16160D protein
STRINGBo7g063980.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.15e-86DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]