PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00070447001 | ||||||||
Common Name | GSBRNA2T00070447001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17671.9 Da PI: 9.9228 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r +lg++ t+e Aa+a++ a +l+g GSBRNA2T00070447001 23 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 72 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.787 | 23 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 23 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-38 | 23 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-9 | 24 | 35 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.47E-26 | 24 | 82 | No hit | No description |
SuperFamily | SSF54171 | 1.63E-21 | 24 | 81 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.6E-12 | 24 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-9 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 158 aa Download sequence Send to blast |
MEGGGVAANV AVSGTTTRKR ERPYKGIRMR KWGKWVAEIR EPNKRSRLWL GSYSTPEAAA 60 RAYDTAVFYL RGPTARLNFP ELLTGEKFTE EDMSAATIRK KATEVGAQVD ALGSAVLDNR 120 HRVFDEKRLK SGGWLLERVD LNKLPDPESS DEDWESK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-15 | 24 | 80 | 6 | 63 | ATERF1 |
3gcc_A | 3e-15 | 24 | 80 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.5256 | 0.0 | flower| seed |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00070447001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ249814 | 1e-112 | DQ249814.1 Brassica rapa subsp. pekinensis cDREB mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595304.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor ERF010 | ||||
Swissprot | Q9FH94 | 3e-89 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A078FIL6 | 1e-110 | A0A078FIL6_BRANA; BnaC07g16160D protein | ||||
STRING | Bo7g063980.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67190.1 | 5e-86 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|