PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00070444001 | ||||||||
Common Name | GSBRNA2T00070444001, LOC106390339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 362aa MW: 40835.5 Da PI: 9.412 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.8e-17 | 103 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GSBRNA2T00070444001 103 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 152 78*******************......55**********************99987 PP | |||||||
2 | AP2 | 42.7 | 1.4e-13 | 195 | 242 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 s+y+GV+ +k grW+A++ + + k+++lg f+t+ eAa+a+++a+ k GSBRNA2T00070444001 195 SKYRGVTLHK-CGRWEARLGQF----LNkKYVYLGLFDTEMEAARAYDKAAIK 242 89********.7******5553....234**********77*********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-8 | 103 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-16 | 103 | 161 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-17 | 104 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.714 | 104 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-30 | 104 | 166 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-9 | 195 | 242 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.50E-23 | 195 | 253 | No hit | No description |
SuperFamily | SSF54171 | 3.4E-17 | 195 | 254 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-17 | 196 | 253 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.949 | 196 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-30 | 196 | 259 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-6 | 197 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-6 | 235 | 255 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MWNLNDSPDH HEESDGRWKR AGDVPISMRS STTCLLSVPP VTRNFFPNQI MEQEVPGISG 60 SGITRNQSLV RSDPSGSGRP ENLELEITQP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH 120 IWDCGKQVYL GGFDTAHAAA RAYDRAAVKF RGVDADINFN IEDYVEDLKQ MSSLTKEEFM 180 HVIRRQSTGF PRGSSKYRGV TLHKCGRWEA RLGQFLNKKY VYLGLFDTEM EAARAYDKAA 240 IKSNGKDAVT NFDPKVYEEQ HNSPEKQWND HNLDLSLGES NSEEFGTKSE TASMRNGFRD 300 EERLLGSHLS LAMTTTATVG SEKQLDGGGK RVGMAAASSG FSPRFPPWNH HTPRTFHFFR 360 P* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.27851 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00070444001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593568.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 | ||||
Refseq | XP_013686235.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | Q9FH95 | 1e-168 | TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3 | ||||
TrEMBL | A0A078FIK1 | 0.0 | A0A078FIK1_BRANA; BnaC07g16190D protein | ||||
TrEMBL | A0A0D3D883 | 0.0 | A0A0D3D883_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E078 | 0.0 | A0A3P6E078_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g064000.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67180.1 | 1e-169 | target of early activation tagged (EAT) 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 106390339 |
Publications ? help Back to Top | |||
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