PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070235001
Common NameGSBRNA2T00070235001, LOC106409629
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 286aa    MW: 33210 Da    PI: 5.4324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070235001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-152067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd ll +++ q   g+W+ +a++ g++R +k+c++rw++yl
  GSBRNA2T00070235001 20 RGPWTLEEDTLLTNYILQNSEGRWNVVAKCAGLKRNGKSCRLRWLNYL 67
                         89********************************************97 PP
2Myb_DNA-binding51.22.9e-1673116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ +++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00070235001  73 RGNLSPQEQLLILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.1361567IPR017930Myb domain
SuperFamilySSF466891.65E-2817114IPR009057Homeodomain-like
SMARTSM007177.2E-121969IPR001005SANT/Myb domain
PfamPF002497.3E-132067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-202174IPR009057Homeodomain-like
CDDcd001673.32E-82267No hitNo description
PROSITE profilePS5129424.47568122IPR017930Myb domain
SMARTSM007174.9E-1472120IPR001005SANT/Myb domain
PfamPF002495.0E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2275121IPR009057Homeodomain-like
CDDcd001678.59E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MENSMKKKTF TESEEVELRR GPWTLEEDTL LTNYILQNSE GRWNVVAKCA GLKRNGKSCR  60
LRWLNYLKPD IRRGNLSPQE QLLILDLHSK WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK  120
QARQLNIESN SDRFFDAVRS FWVPRLIEKM EQNPSNTYCC PQNNNNNNNS LLPPSQSYDS  180
MSKQTYTDIS GKNPGISNTD VSASSSTFMP DLMTVPHFMD HNTIIDSSMC YHEGNDQELG  240
GYIPGMEEYY MRNSDISTDC HVAEAYEDVT QDPMWNVDDI WQFRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-23171221105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-221712255159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-221712255159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070235001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756551e-180KM975655.1 Brassica napus MYB transcription factor 62.1 (MYB62.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705685.10.0transcription factor MYB62
SwissprotQ9C9G71e-153MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A078FEA60.0A0A078FEA6_BRANA; BnaA02g13730D protein
STRINGBra033948.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-155myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]