PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00070034001

Common Name

GSBRNA2T00070034001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 92aa MW: 9919.48 Da PI: 8.9698

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00070034001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	27.1	1.2e-08	32	74	5	47
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaa 47 + +C +CGn a+ C ++ C+ CC + C h k t + ++ GSBRNA2T00070034001 32 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHGKMTLIITQ 74 569**********************************998654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.3E-6	34	73	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MSAPSPSPSP SLTNNGLLAA VTPTTNLRGR NKPKCIQCGN VARSRCPFQS CKGCCSRAEN 60 PCPIHGKMTL IITQNDQRLE FDKSIFSLGE LL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.7331	5e-52	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00070034001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151450.1	3e-41	PREDICTED: uncharacterized protein LOC103874760
TrEMBL	A0A078JR91	3e-60	A0A078JR91_BRANA; BnaAnng26410D protein (Fragment)
STRING	Bra010182.1-P	1e-40	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	5e-30

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]