PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069872001
Common NameGSBRNA2T00069872001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 392aa    MW: 44566.2 Da    PI: 6.3447
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069872001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.81.9e-25290373186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+++ev+aLi+ r+e+ee+ +    k++ W+e+s++m+ rg+ers+k+Ckekwen+nk+yk++ e++kk+ +e+++t +yf+ le
  GSBRNA2T00069872001 290 RWPQEEVQALIASRSEVEEKTGVV-HKGAIWDEISARMKGRGYERSAKKCKEKWENMNKYYKRVMESSKKQ-PEHTKTRSYFELLE 373
                          8********************998.89******************************************95.9*********9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.3E-4287348IPR001005SANT/Myb domain
SuperFamilySSF466898.65E-5289357IPR009057Homeodomain-like
PfamPF138372.5E-19289374No hitNo description
CDDcd122032.61E-23289352No hitNo description
Gene3DG3DSA:1.10.10.603.5E-5290346IPR009057Homeodomain-like
PROSITE profilePS500907.468290346IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MELLAGNCRK RLADDDFAED VDPFGGSDWM YGGRSLRSQE NDDALATLAD LAPPPQKLRP  60
IRCVVNKASL EDRHPLDILA GSLDRLPEMG FLEDGCFDAP LGSKIADVEE SGQSTRGVGK  120
GLGFETEVQG PVSIHRTSRD GVSLSPSFDS DSEGDSSQGV GKAVTGKRKR QSREKLEHFM  180
EKLVGKMMMR QEKLHNQLIN VMEKMEWERV RSEEAWRQQE MERMKQNEEA RREEMSRSST  240
LISFIKSVIG EEIKIPNAFV HAQPLQTIPR QCEWDQTQGD VKFVFPGGRR WPQEEVQALI  300
ASRSEVEEKT GVVHKGAIWD EISARMKGRG YERSAKKCKE KWENMNKYYK RVMESSKKQP  360
EHTKTRSYFE LLESFYKTNS VTAEHSGEKE Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.91530.0seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069872001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834950.0AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716012.10.0trihelix transcription factor GTL1-like
TrEMBLA0A078HPU20.0A0A078HPU2_BRANA; BnaC02g33420D protein
STRINGBo2g133550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-147Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]