PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00069510001 | ||||||||
Common Name | GSBRNA2T00069510001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 579aa MW: 62495.1 Da PI: 7.6121 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.6e-09 | 372 | 404 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + GSBRNA2T00069510001 372 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 404 89*****************************87 PP | |||||||
2 | BELL | 107.5 | 8.4e-35 | 227 | 294 | 5 | 72 |
BELL 5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 k k+kL+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY+sl lka+SrhF+cLk+ai+eq+ GSBRNA2T00069510001 227 FMKNKSKLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYASLTLKALSRHFKCLKNAITEQL 294 5678**************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.8E-63 | 165 | 292 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-34 | 170 | 291 | IPR006563 | POX domain |
SMART | SM00389 | 4.0E-9 | 348 | 412 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.03E-11 | 348 | 409 | No hit | No description |
SuperFamily | SSF46689 | 8.98E-17 | 350 | 415 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-27 | 352 | 412 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-18 | 365 | 404 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 11.645 | 367 | 408 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HHPHPPSSSG GGAGVYPLGD SDYLAAGGFH 60 SNNNSHISNP SYSNFMGFLG GPSSSSSNAV AVAGDQSFHD GLSSGDVLVF KPEPLSLSLS 120 SHPRLTYDLV VPGVVNSGYG RSAAEAAAAT VTVASRSSGP LGPFTGYASI LKGSRFLKPA 180 QILLDEFCSV GHGIYTDKNI DGDDSSLLFD PTVESLCGAS DSGGGEFMKN KSKLISMLDE 240 VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YASLTLKALS RHFKCLKNAI TEQLQFSTNN 300 KIQQQQSGHL MISENRTESM RFGGSDSSRG LCSAGQRHGF PDNHAPVWRP HRGLPERAVT 360 VLRAWLFDHF LHPYPTDTDK LMLAKQTGLS RNQVSNWFIN ARVRVWKPMV EEIHMLETRQ 420 SQRSSSSSWR DERNTTTVFP DNNNNPSSST AQQRANNNSS PARRVQNDDV HATTTNNNNN 480 NFMNAGNSGS GGAVAFSYGI ASSNVAGMSS STNGGVSLTL GLHHQIGLPE PFPMTTAQRF 540 GLEGVSSGGG GESYVQNRQF GRDFIGGSNP QFLHDFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-16 | 354 | 411 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 354 | 411 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 1e-16 | 354 | 412 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-16 | 354 | 412 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00069510001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122816.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 0.0 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A078HR61 | 0.0 | A0A078HR61_BRANA; BnaA10g27410D protein | ||||
STRING | Bra009618.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5688 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 0.0 | TALE family protein |