PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069228001
Common NameGSBRNA2T00069228001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 252aa    MW: 28524.3 Da    PI: 6.9484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069228001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.1e-1670122155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++ +hn+ Er RR++iNs f+ Lr++lP  +   + kKls  +++ +  +YI +Lq
  GSBRNA2T00069228001  70 KKLNHNASERDRRKKINSLFSSLRSCLPAsD---QTKKLSIPQTVSRSLKYIPELQ 122
                          6789*************************55...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57769121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.06E-1470126No hitNo description
Gene3DG3DSA:4.10.280.105.3E-1570135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-1770139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-1370122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-1275127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MCALVPPLFP NFGWPSTGEY ESNYLAGVNL EDFTFLDFPA PETYGVEHHQ EIQEMLGVSV  60
PSEGNGVVTK KLNHNASERD RRKKINSLFS SLRSCLPASD QTKKLSIPQT VSRSLKYIPE  120
LQEQVKKLIQ KKEELLVRVS GQRAIEHYVE PQPKAVARYV STISATKLGD NEVLVQISSS  180
KNHNFSISNV LSGLEEDGFV LVDVSSSRYH GKWLFYSLHL QMGNKDNHKL KCEELSQRIL  240
YLYEECENSF R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.100273e-46seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069228001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615108.10.0PREDICTED: transcription factor ORG2-like
SwissprotQ9M1K11e-132ORG2_ARATH; Transcription factor ORG2
TrEMBLA0A078JMP40.0A0A078JMP4_BRANA; BnaCnng57560D protein
STRINGBo01495s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-134bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Matsuoka K, et al.
    Gibberellin-induced expression of Fe uptake-related genes in Arabidopsis.
    Plant Cell Physiol., 2014. 55(1): p. 87-98
    [PMID:24192296]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  5. Shen C, et al.
    Involvement of endogenous salicylic acid in iron-deficiency responses in Arabidopsis.
    J. Exp. Bot., 2016. 67(14): p. 4179-93
    [PMID:27208542]
  6. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  7. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  8. Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC
    S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis.
    Plant J., 2018. 94(1): p. 157-168
    [PMID:29396986]
  9. Kurt F,Filiz E
    Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.
    Biometals, 2018. 31(4): p. 489-504
    [PMID:29546482]