PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00068983001

Common Name

GSBRNA2T00068983001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 363aa MW: 41686.2 Da PI: 7.4166

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00068983001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.4e-12	76	108	3	35
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 ++k +rr+++NReAAr+sR+RKka++++Le+ GSBRNA2T00068983001 76 PDKTQRRLAQNREAARKSRLRKKAYVQQLETSR 108 689**************************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-5	74	132	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.76	76	118	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-9	76	106	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	78	119	No hit	No description
SuperFamily	SSF57959	2.32E-7	78	113	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-30	164	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNTTSTHFVP PRRFEIYETT LNQVSMWEEN FKNNGGIYIP NSIIIPTDAK QDSLSEDTSH 60 GTPHKFDQEA STSRHPDKTQ RRLAQNREAA RKSRLRKKAY VQQLETSRLK LIHLEQELDR 120 ARQQGFYEGN RVDTNALGFS DKMSSGIVAF EMEYGHWVEE QNRQISELRT VLQGQVSDVE 180 LRLLVDNAMK HYFQLFRMKS AAAKIDVFYI MSGMWKTSAE RFFMWIGGFR PSELLKVLLP 240 HFDPLMDQQV LDVCNLRQSC QQAEDAVSQG MEKLQHTLAD SVAAGNLGEG SYIPQITCAM 300 ERLEALVSFV DQADHLRHET LQQMHRILTT RQAARGLLAL GEYFQRLRAL SSSWATRQRE 360 PT*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNTTSTHFVP PRRFEIYETT LNQVSMWEEN FKNNGGIYIP NSIIIPTDAK QDSLSEDTSH  60
GTPHKFDQEA STSRHPDKTQ RRLAQNREAA RKSRLRKKAY VQQLETSRLK LIHLEQELDR  120
ARQQGFYEGN RVDTNALGFS DKMSSGIVAF EMEYGHWVEE QNRQISELRT VLQGQVSDVE  180
LRLLVDNAMK HYFQLFRMKS AAAKIDVFYI MSGMWKTSAE RFFMWIGGFR PSELLKVLLP  240
HFDPLMDQQV LDVCNLRQSC QQAEDAVSQG MEKLQHTLAD SVAAGNLGEG SYIPQITCAM  300
ERLEALVSFV DQADHLRHET LQQMHRILTT RQAARGLLAL GEYFQRLRAL SSSWATRQRE  360
PT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00068983001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353085	0.0	AK353085.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-F22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013712734.1	0.0	transcription factor TGA4-like isoform X1
Refseq	XP_013712735.1	0.0	transcription factor TGA4-like isoform X1
Refseq	XP_022551437.1	0.0	transcription factor TGA4-like isoform X1
Swissprot	Q39162	0.0	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A078HS17	0.0	A0A078HS17_BRANA; BnaC02g00560D protein
STRING	Bo2g009670.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	0.0	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]