PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068896001
Common NameGSBRNA2T00068896001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family STAT
Protein Properties Length: 650aa    MW: 73287.6 Da    PI: 4.6333
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068896001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT179.16.4e-562243411118
                 STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 
                          ldvvl+na+gqpv+kdv+vvasLlya+sg++vek++d eapLL+sydGvefs+ed+p+ ll+G+as+klkisq  skcd+rLf+ikfeip
  GSBRNA2T00068896001 224 LDVVLSNAIGQPVRKDVQVVASLLYANSGTPVEKTSDLEAPLLVSYDGVEFSAEDKPCTLLNGCASLKLKISQHYSKCDKRLFCIKFEIP 313
                          8***************************************************************************************** PP

                 STAT  91 klkkypfleavskpirCisrsrntrsss 118
                          +  +ypflea+++++rCisr+ +  s+s
  GSBRNA2T00068896001 314 NKGSYPFLEAFTNQMRCISRTASDSSLS 341
                          ********************98766554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2003.0E-525149IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133858.2E-827172No hitNo description
SuperFamilySSF498991.58E-829166IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103381.03E-64549649No hitNo description
SuperFamilySSF555501.81E-11557644IPR000980SH2 domain
Gene3DG3DSA:3.30.505.109.1E-8557607IPR000980SH2 domain
PROSITE profilePS5000110.048560613IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MADGCALDTE KYSLLEDFNV DVEVEKQEFE TFSLCFWVYL LDSTTYPSTI IRQVHSDMSF  60
SAPFLVLDEN KKMILLPLTL LHKEAPDPVN TASWTEVPNV STTAEFPLQR WVHVGCEVSR  120
NYMRLYICGK MVGEKVLTSV MTNGTNSDNV RRVSLFSVGG DGYSVQGFIH CAQVLPSTVH  180
VNNHCTKDPP LWLSVEKPST CEVDEDGVWS IVGEKASCGM IFSLDVVLSN AIGQPVRKDV  240
QVVASLLYAN SGTPVEKTSD LEAPLLVSYD GVEFSAEDKP CTLLNGCASL KLKISQHYSK  300
CDKRLFCIKF EIPNKGSYPF LEAFTNQMRC ISRTASDSSL SMKRIKLGEE KIPESEFEGG  360
NGTSMEWGPQ NQDDEEEEEE EEEEDQSSTD SDNTEVRGST GSRRYTISDS TIFKYCLGNL  420
TERSLIMKEI TNNAGDEEVS EFADQVSLYS GCSHHGYQIK MARKLIAEGT NAWILISRNY  480
QNVHWDNVVI EIEEHFMRIA NCSSRSLTHQ DFELLRRICG CYDYITQENF EKMWCWLFPV  540
ATSISRGLIN GMWRSCSPKW IEGFVTKEEA EHSLQSQEPG TFILRFPTSR SWPHPDAGSL  600
VVTYVGRDFV IRHRLLAVDH ICDSSERYTD AKPLQDMLLA EPELSRLGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339346LSMKRIKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068896001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660439.10.0SH2 domain-containing protein A-like
RefseqXP_013660441.10.0SH2 domain-containing protein A-like
RefseqXP_013660442.10.0SH2 domain-containing protein A-like
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLA0A078HNA30.0A0A078HNA3_BRANA; BnaC05g13150D protein
STRINGBo5g022370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]