PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00068896001 | ||||||||
Common Name | GSBRNA2T00068896001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | STAT | ||||||||
Protein Properties | Length: 650aa MW: 73287.6 Da PI: 4.6333 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 179.1 | 6.4e-56 | 224 | 341 | 1 | 118 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 ldvvl+na+gqpv+kdv+vvasLlya+sg++vek++d eapLL+sydGvefs+ed+p+ ll+G+as+klkisq skcd+rLf+ikfeip GSBRNA2T00068896001 224 LDVVLSNAIGQPVRKDVQVVASLLYANSGTPVEKTSDLEAPLLVSYDGVEFSAEDKPCTLLNGCASLKLKISQHYSKCDKRLFCIKFEIP 313 8***************************************************************************************** PP STAT 91 klkkypfleavskpirCisrsrntrsss 118 + +ypflea+++++rCisr+ + s+s GSBRNA2T00068896001 314 NKGSYPFLEAFTNQMRCISRTASDSSLS 341 ********************98766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 3.0E-5 | 25 | 149 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 8.2E-8 | 27 | 172 | No hit | No description |
SuperFamily | SSF49899 | 1.58E-8 | 29 | 166 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
CDD | cd10338 | 1.03E-64 | 549 | 649 | No hit | No description |
SuperFamily | SSF55550 | 1.81E-11 | 557 | 644 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 9.1E-8 | 557 | 607 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.048 | 560 | 613 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MADGCALDTE KYSLLEDFNV DVEVEKQEFE TFSLCFWVYL LDSTTYPSTI IRQVHSDMSF 60 SAPFLVLDEN KKMILLPLTL LHKEAPDPVN TASWTEVPNV STTAEFPLQR WVHVGCEVSR 120 NYMRLYICGK MVGEKVLTSV MTNGTNSDNV RRVSLFSVGG DGYSVQGFIH CAQVLPSTVH 180 VNNHCTKDPP LWLSVEKPST CEVDEDGVWS IVGEKASCGM IFSLDVVLSN AIGQPVRKDV 240 QVVASLLYAN SGTPVEKTSD LEAPLLVSYD GVEFSAEDKP CTLLNGCASL KLKISQHYSK 300 CDKRLFCIKF EIPNKGSYPF LEAFTNQMRC ISRTASDSSL SMKRIKLGEE KIPESEFEGG 360 NGTSMEWGPQ NQDDEEEEEE EEEEDQSSTD SDNTEVRGST GSRRYTISDS TIFKYCLGNL 420 TERSLIMKEI TNNAGDEEVS EFADQVSLYS GCSHHGYQIK MARKLIAEGT NAWILISRNY 480 QNVHWDNVVI EIEEHFMRIA NCSSRSLTHQ DFELLRRICG CYDYITQENF EKMWCWLFPV 540 ATSISRGLIN GMWRSCSPKW IEGFVTKEEA EHSLQSQEPG TFILRFPTSR SWPHPDAGSL 600 VVTYVGRDFV IRHRLLAVDH ICDSSERYTD AKPLQDMLLA EPELSRLGR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 346 | LSMKRIKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00068896001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013660439.1 | 0.0 | SH2 domain-containing protein A-like | ||||
Refseq | XP_013660441.1 | 0.0 | SH2 domain-containing protein A-like | ||||
Refseq | XP_013660442.1 | 0.0 | SH2 domain-containing protein A-like | ||||
Swissprot | B5X561 | 0.0 | SHA_ARATH; SH2 domain-containing protein A | ||||
TrEMBL | A0A078HNA3 | 0.0 | A0A078HNA3_BRANA; BnaC05g13150D protein | ||||
STRING | Bo5g022370.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.1 | 0.0 | SH2 domain protein A |
Publications ? help Back to Top | |||
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