PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00068769001

Common Name

GSBRNA2T00068769001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 372aa MW: 42038.5 Da PI: 9.5122

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00068769001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22	3.5e-07	240	276	17	53
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 A+rsR RK+++i eLe+ v++L+ae ++ l+ l+ GSBRNA2T00068769001 240 AQRSRVRKLQYISELERTVQALQAEGSKVSADLDFLN 276 89***********************888777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-5	224	299	No hit	No description
CDD	cd14703	2.76E-14	232	279	No hit	No description
SuperFamily	SSF57959	2.38E-5	240	282	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MASSKGTQSV KDLMHPGKNA LLPPKIPFPT VSAPYSEYIP LGSRHHGHKL NDEKPHHHHH 60 HQRTSSESDL VEEPPFWLDD LLNEPESPVR KCGHRRSSSD SYAYLDMANA KNISLTLQND 120 FSYRNTGSST QRGGVHELDW NQNAAFYSDS NFLNQTNRQR DSLVAASGPR PSWQPFTRES 180 VGGKHMGSSS YMPQEAPETK NYAKTLSHDA KKFSPEQKHS NAQPVTCDAD NTRRAKQQFA 240 QRSRVRKLQY ISELERTVQA LQAEGSKVSA DLDFLNQRNL ILSMENKALK QRLESIAQEK 300 LIKQMEQELL EKEIGRLRAL YQQQQQTQQP QASHKRAGSK DLDSQFSSLS LNSKDSNSSR 360 DSVSVTSQFH F*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MASSKGTQSV KDLMHPGKNA LLPPKIPFPT VSAPYSEYIP LGSRHHGHKL NDEKPHHHHH  60
HQRTSSESDL VEEPPFWLDD LLNEPESPVR KCGHRRSSSD SYAYLDMANA KNISLTLQND  120
FSYRNTGSST QRGGVHELDW NQNAAFYSDS NFLNQTNRQR DSLVAASGPR PSWQPFTRES  180
VGGKHMGSSS YMPQEAPETK NYAKTLSHDA KKFSPEQKHS NAQPVTCDAD NTRRAKQQFA  240
QRSRVRKLQY ISELERTVQA LQAEGSKVSA DLDFLNQRNL ILSMENKALK QRLESIAQEK  300
LIKQMEQELL EKEIGRLRAL YQQQQQTQQP QASHKRAGSK DLDSQFSSLS LNSKDSNSSR  360
DSVSVTSQFH F*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10678	0.0	microspore-derived embryo\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00068769001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113332.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
TrEMBL	A0A078HT20	0.0	A0A078HT20_BRANA; BnaA09g14950D protein
STRING	Bra027885.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-164	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]