PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068309001
Common NameGSBRNA2T00068309001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 690aa    MW: 77936 Da    PI: 5.7659
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068309001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.68e-172979656
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++t++q++ Le++F+++++p++++r+   + l+L  +qVk+WFqN+R++ k
  GSBRNA2T00068309001 29 RHTPQQIQKLEAYFKECPHPNESQRQAFCDVLNLGIDQVKFWFQNKRTQSK 79
                         689*********************************************988 PP
2START108.21.3e-342104343206
                          HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
                START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                          a +a +el ++   +e++Wv ss   +  + +e++ kf+ s         ++e +++++vv+ +++ l   +ld+  +W+  ++    +a
  GSBRNA2T00068309001 210 AATAVEELKRLFRTDEALWVMSSidrTYVIDQESYEKFSHSVKhfrnlsARVESSKDITVVPIEATSLIDMFLDSE-KWKMLFPtivnEA 298
                          6788999999999**********988556666666666443337788999****************9999999999.99999988888** PP

                          EEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  80 etlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                          +t+ ++ s        ++lq++  +l  lsplvp R+f++vR+++q g+g w+i+dvS ds+  +++++ +  + ++pSg+li++ +n h
  GSBRNA2T00068309001 299 KTIHTLGSElpinencNVLQVIWEQLHILSPLVPpREFMIVRCCQQIGEGLWIIADVSQDSQHIVNSDQASPSCYKRPSGCLIRSFPNAH 388
                          *****************************************************************99888888899************** PP

                          EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          ++v w+ehv+++     h ++r lv+ +   ga++w  tl+r ce+
  GSBRNA2T00068309001 389 TEVRWIEHVEVDHTADtHKMYRELVSGSSGYGARRWIVTLERMCER 434
                          ************99988***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-16679IPR009057Homeodomain-like
SuperFamilySSF466896.84E-16981IPR009057Homeodomain-like
SMARTSM003898.8E-132185IPR001356Homeobox domain
PROSITE profilePS5007114.8682181IPR001356Homeobox domain
CDDcd000861.04E-122881No hitNo description
PfamPF000462.5E-142979IPR001356Homeobox domain
PROSITE profilePS5084838.031199437IPR002913START domain
SuperFamilySSF559611.37E-24200435No hitNo description
CDDcd088756.08E-88204433No hitNo description
SMARTSM002343.0E-17208434IPR002913START domain
PfamPF018524.5E-28210434IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-5212400IPR023393START-like domain
SuperFamilySSF559614.12E-8456649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MDYDGDGSPD NEHYTSVNAM SKEKRICHRH TPQQIQKLEA YFKECPHPNE SQRQAFCDVL  60
NLGIDQVKFW FQNKRTQSKA QDERTSNMLL REENEKLRLE NAAMIEVLKN VTCPPCGGPP  120
FGRDDRESNL HKMRLENSFF KTERDSLAAA NNKNQQTMLD SLTSVQRQQT FEALTSYGMN  180
PYNQPSSLES QTIQPQLLPQ MDIPQLSETA ATAVEELKRL FRTDEALWVM SSIDRTYVID  240
QESYEKFSHS VKHFRNLSAR VESSKDITVV PIEATSLIDM FLDSEKWKML FPTIVNEAKT  300
IHTLGSELPI NENCNVLQVI WEQLHILSPL VPPREFMIVR CCQQIGEGLW IIADVSQDSQ  360
HIVNSDQASP SCYKRPSGCL IRSFPNAHTE VRWIEHVEVD HTADTHKMYR ELVSGSSGYG  420
ARRWIVTLER MCERMALSSI LIMPATDWSE TIPTVEGRRS VMKLGERMLK IFNEMLIMSG  480
KVEFPQQSKC GVRISIRMNK EPGQLPGLVV SAASCLSIPL TPLQVFNCLR SDDTRHQWDV  540
LCRGNAITET ARIFTGSSGT NCINLLQPTP LWGTGQNMVQ EPHKKMMVLQ ECYMDALGGM  600
IVYSPLDMAT MSIAASGEVD PLNIPILPSG FTISSDNSEG TLLMLAFQIL NSDENSKTRS  660
VSEIAVDRVS RLISQTVQSI KLMLNCPPE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068309001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584487.10.0PREDICTED: homeobox-leucine zipper protein HDG8
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A078JN830.0A0A078JN83_BRANA; BnaAnng25630D protein
STRINGBo5g150100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]