PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00068249001 | ||||||||
Common Name | GSBRNA2T00068249001, LOC106446480, LOC106451732 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 646aa MW: 71244.7 Da PI: 7.072 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 454 | 491 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + GSBRNA2T00068249001 454 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 491 665569******************************88 PP | |||||||
2 | BELL | 123.6 | 7.7e-40 | 312 | 383 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ GSBRNA2T00068249001 312 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 383 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.5E-83 | 238 | 381 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-51 | 244 | 380 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.86 | 432 | 495 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-9 | 435 | 499 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.78E-12 | 435 | 496 | No hit | No description |
SuperFamily | SSF46689 | 1.28E-17 | 436 | 502 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 438 | 501 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 452 | 491 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MGLATTTVPH HRHHHKTLDN SLDSMSQDYH HHQGIFSFSS GFHRPSSSHQ EEVEESAVSG 60 AQIPVYETAG MLSEMFTYPG GGNGGSGEIL DHSTKQLLEQ QNRHNNNNST LHMLLPNHHH 120 QGYGYPNEQQ FTWPSSSDHH QSQGDMIGTV HVEGGKGLSL SLSSSLEAAA AAAKAEEYRS 180 IYCAAVDGTS SSSNASVHHH QFNQLKTLLL DNSSSHQHQV MGHFGSSSSS PMAASSSIGG 240 IYTLRNSKYT KPAQELLEEF CSVGRGHHFK KNKLSRNNSN PNTSGCGGGG GGGGSSSTAG 300 AANDSPPLSP ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY 360 TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKESAGAAS SGLTKGETPR LRLLEQSLRQ 420 QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ 480 VSNWFINARV RLWKPMVEEM YQQEAKEREE EELGENKKED YQHQRRHQQT NNKDTKPNES 540 NFTLVQTITA QTPTTTMMTS TPHENDPSSL PPSTSVANAP SLGVSGAFTV STCQQDVSDF 600 HVEDGVIRFG TKQAGDVSLT LGLRHTGNMP DNKNPSFSVR DFGDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 7e-16 | 441 | 498 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-16 | 441 | 498 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 283 | 294 | SGCGGGGGGGGS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00068249001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352811 | 0.0 | AK352811.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-J15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013743679.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_013749164.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 0.0 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A078HQR5 | 0.0 | A0A078HQR5_BRANA; BnaA04g13860D protein | ||||
TrEMBL | A0A397ZML5 | 0.0 | A0A397ZML5_BRACM; Uncharacterized protein | ||||
STRING | Bo4g151860.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 0.0 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 106446480 | 106451732 |
Publications ? help Back to Top | |||
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