PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068140001
Common NameGSBRNA2T00068140001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 292aa    MW: 32284.1 Da    PI: 8.2869
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068140001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-09625625
                         -SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  6 CrffartGtCkyGdrCkFaH 25
                         C++++rtG CkyG +C+F+H
  GSBRNA2T00068140001  6 CKYYFRTGGCKYGLTCRFNH 25
                         ******************** PP
2zf-CCCH36.67.7e-125073326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         + +C f++r+G Ck+G+ CkF+H+
  GSBRNA2T00068140001 50 EIECLFYMRNGSCKFGADCKFNHP 73
                         568********************9 PP
3zf-CCCH20.96.2e-07191216227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C+++++tG Ck+  +Ck++H++
  GSBRNA2T00068140001 191 DQPDCSYYLKTGDCKFKFTCKYNHPK 216
                          6899********************96 PP
4zf-CCCH36.39.7e-12237261226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C +++r+G+Ck+G+ C+F H+
  GSBRNA2T00068140001 237 DQVICTHYSRYGICKFGPACRFDHS 261
                          6799********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.23128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0079127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5429IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4626IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7625IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-64774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7094775IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-95073IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-65174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-45372IPR000571Zinc finger, CCCH-type
SMARTSM003560.42189216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737189217IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4191216IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-5235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981235263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6237262IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-9237261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4240262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRLMDCKYYF RTGGCKYGLT CRFNHTKPNS DVPPSAPELN FLGLPIRPGE IECLFYMRNG  60
SCKFGADCKF NHPDPTTLGG TDSPSFHGNN GGSVGSFSPK STFQPSSTSW SSPRHANGTA  120
PFIPSMLSQS RGASSQAPEW IGYQATSMYP SERSVFSTST TYLMNNSTAE TSIFTPYKYQ  180
KPAEEFPERP DQPDCSYYLK TGDCKFKFTC KYNHPKNRLP KQPPFALNDK GLPLRPDQVI  240
CTHYSRYGIC KFGPACRFDH SIQLPDSTGS SHVVVEPPQV GAHGNESDGW N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.43320.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068140001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724867.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM41e-170C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A078HM880.0A0A078HM88_BRANA; BnaCnng09540D protein
TrEMBLA0A3P6GIQ40.0A0A3P6GIQ4_BRAOL; Uncharacterized protein
STRINGBo8g076940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-162C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]