PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068063001
Common NameGSBRNA2T00068063001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 620aa    MW: 71463 Da    PI: 5.6413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068063001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.21.6e-1072406162373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                          ++lL++cA+a+s+gd++ a  lL ++++ +sp gd+ qRla++f++AL+arl++++  + ++  ++ ++ +++ s+ l+a++++   sP+
  GSBRNA2T00068063001 240 RTLLTHCAQAISTGDKTTALDLLLQIRQDSSPIGDASQRLAHCFANALEARLQGTTGPVIQTYyNAITSLKETASDILKAYRVYLSSSPF 329
                          689***************************************************6655555553888888888***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +++ ++   ++Il+a++ +e +H++Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rL++++++++vpfe+
  GSBRNA2T00068063001 330 VTLMYFFSFRMILDAAKDAEVLHVVDFGILYGFQWPMFIQYMSGRKDVPRKLRITGIELPQRGlrPAERIEETGRRLSEYCKRFNVPFEY 419
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          ++++++++e+++l+e++++pgE+laVn  l+l++l de++  e  +rd+vLkl+++++P+v+v++  + + n++ F  rf ea+++y al
  GSBRNA2T00068063001 420 KAIASQHWETIRLDEFDIRPGEVLAVNAGLRLKTLQDETGGEETcPRDAVLKLIRKMNPDVFVHAIVNGSFNAPFFISRFKEAVYHYYAL 509
                          **9999**********************************999999******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          fd+++++lpr+++eri  Ere+ gre++nv+ace+ +r+er et+++W+ r+ +aGFk+ p+++++++  +  l+k    + + v+e+s+
  GSBRNA2T00068063001 510 FDMFDSTLPRDNQERIRFEREFYGREAMNVIACEEGDRVERPETYRQWQVRMVRAGFKQKPVRDEIVELFREKLKKWRyHKDFVVDENSK 599
                          ***************************************************************************9998999******** PP

                 GRAS 357 slvlgWkdrpLvsvSaW 373
                          +l++gWk+r+L++ S+W
  GSBRNA2T00068063001 600 WLLQGWKGRTLYASSCW 616
                          ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.752213596IPR005202Transcription factor GRAS
PfamPF035145.4E-105240616IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MDPNISLNGF EYLDESLFLD SSPSFDFDRN PSFLADPTEE PDENDSSTTL LRYVTQILME  60
ESVGDKQSMF YDSLALRKTE EMLQQVITDS KAHSFTTSDA SGSIGSSSSS LPVNEIVVKS  120
MFSDAESDLQ FRRGLEEARK FLPNSDQWVF NLERPVEVIK EEMGLRVKKS HEREFLDLEE  180
VRSSKQSATN VEDVEVTDMF DKVLLLDGQC DPQTLSENKH QQTKKKKTKT KKKSQVIDFR  240
TLLTHCAQAI STGDKTTALD LLLQIRQDSS PIGDASQRLA HCFANALEAR LQGTTGPVIQ  300
TYYNAITSLK ETASDILKAY RVYLSSSPFV TLMYFFSFRM ILDAAKDAEV LHVVDFGILY  360
GFQWPMFIQY MSGRKDVPRK LRITGIELPQ RGLRPAERIE ETGRRLSEYC KRFNVPFEYK  420
AIASQHWETI RLDEFDIRPG EVLAVNAGLR LKTLQDETGG EETCPRDAVL KLIRKMNPDV  480
FVHAIVNGSF NAPFFISRFK EAVYHYYALF DMFDSTLPRD NQERIRFERE FYGREAMNVI  540
ACEEGDRVER PETYRQWQVR MVRAGFKQKP VRDEIVELFR EKLKKWRYHK DFVVDENSKW  600
LLQGWKGRTL YASSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-432436168374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068063001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636979.10.0PREDICTED: scarecrow-like protein 34
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A078HM600.0A0A078HM60_BRANA; BnaC04g15290D protein
STRINGBo4g065830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]