PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00067696001 | ||||||||
Common Name | GSBRNA2T00067696001, LOC106432091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 599aa MW: 66080.2 Da PI: 5.3229 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 318.9 | 1.1e-97 | 229 | 597 | 2 | 374 |
GRAS 2 velLlecAeavssgdle.....laqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 +e+L+++Ae + +++++ laq +Larl+++ s + + p+qR+a+++teAL + +++ +p s++n++ ++aa GSBRNA2T00067696001 229 IEQLFNAAELIGNNNNNgdhtaLAQGILARLNHHLSYSNNnnnknpPFQRAASHITEALLSLINN--------ASPPLISPENMILRIAA 310 6899******9997766666669**********95544433467779*****************9........4444455678******* PP GRAS 81 lklfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetger 164 +++fse+sP+l+f ++taNq Ile+ + e +r+HiiDfd+++G+QW +L+q+LasR+ + + sl+iT++++p s+ ++ el+ t+e+ GSBRNA2T00067696001 311 YRTFSETSPFLQFVNFTANQSILESCNDElgfDRIHIIDFDVGYGGQWSSLMQELASRRrNRASSLKITVFAPPPSTvsDEFELRFTEEN 400 ***************************99999************************99857778*********9988899********** PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252 L++fA e+++pfe+++l + l + ++ ++++ +Ea+aVnl ++ + + +L+++k++sP+vvv++++ +d+n+++ GSBRNA2T00067696001 401 LRSFAGEVKIPFEIELLSLELLLNPAYWPVSLRSleKEAVAVNLPVNSVVSG--------YLPFILRFLKQISPNVVVCSDRGCDRNDAP 482 ****************97777777788877777766*********9655554........4566************************** PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 F + +++al+y+++l++sl+a+ +s+e+ +vEr++++++i++++++++++ e+ + Wr+ ++++GF+p++ls++a++qa++ll+ GSBRNA2T00067696001 483 FPNAVIHALQYHTTLLESLDAN---QSQEDESVERFWVQPSIEKLLMKRHRW----IERSQPWRSLFTQCGFSPASLSQTAEAQAECLLQ 565 **********************...8**************************....88888***************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +++g++ve+++gslv++W++++Lv+vSaW+ GSBRNA2T00067696001 566 RSPVRGFHVEKRHGSLVMCWQRKELVTVSAWK 597 *******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.312 | 202 | 577 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-95 | 229 | 597 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MPLSFERFQG EGVFGVVSSL YSDPQKIWFN QDKTGAEQDL GYVVGGVLPE PTSVLDALRS 60 PSPLASHSST TTTMTLSSSH GGGTVTATAT AVDDKCSQIG LDDLDGGQEQ SILRLIMDPG 120 SGFGVFDPGF GFGSGSVPVN PLLSSSFPYQ EELTFSNPPS SPPAKRFNSG SHQPVFPFPD 180 PGHDPFLVRR QQQFQFPFQF HQQQLPSSSS SLAPVPPPGT AGDDQTVIIE QLFNAAELIG 240 NNNNNGDHTA LAQGILARLN HHLSYSNNNN NKNPPFQRAA SHITEALLSL INNASPPLIS 300 PENMILRIAA YRTFSETSPF LQFVNFTANQ SILESCNDEL GFDRIHIIDF DVGYGGQWSS 360 LMQELASRRR NRASSLKITV FAPPPSTVSD EFELRFTEEN LRSFAGEVKI PFEIELLSLE 420 LLLNPAYWPV SLRSLEKEAV AVNLPVNSVV SGYLPFILRF LKQISPNVVV CSDRGCDRND 480 APFPNAVIHA LQYHTTLLES LDANQSQEDE SVERFWVQPS IEKLLMKRHR WIERSQPWRS 540 LFTQCGFSPA SLSQTAEAQA ECLLQRSPVR GFHVEKRHGS LVMCWQRKEL VTVSAWKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-29 | 270 | 597 | 34 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6706 | 0.0 | leaf| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00067696001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189445 | 0.0 | AC189445.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013728382.1 | 0.0 | scarecrow-like protein 27 | ||||
Swissprot | Q7XJM8 | 0.0 | SCL27_ARATH; Scarecrow-like protein 27 | ||||
TrEMBL | A0A078JM97 | 0.0 | A0A078JM97_BRANA; BnaCnng57010D protein | ||||
STRING | Bo6g074360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13417 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45160.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106432091 |
Publications ? help Back to Top | |||
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