PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00067621001 | ||||||||
Common Name | GSBRNA2T00067621001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 244aa MW: 27638.7 Da PI: 9.1529 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 101.7 | 4.4e-32 | 21 | 77 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + cprC s+ntkfC+ynny ++qPry C++Crr+Wt+GGalr+vP+Gg +rk k+ GSBRNA2T00067621001 21 PRVCPRCSSDNTKFCFYNNYRVTQPRYNCRNCRRFWTHGGALRDVPIGGRARKIKRI 77 678**************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-21 | 16 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.049 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-29 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDNSNVLVRG NRQVNEEKPP PRVCPRCSSD NTKFCFYNNY RVTQPRYNCR NCRRFWTHGG 60 ALRDVPIGGR ARKIKRIEQP SVSQVVPDEI QQVNHHQPFS HVQETTQFLE PFGGSYSSAV 120 VGNHFSPLPE THGDMMLPTR SIPPMDLFDG LFHQGYYGAG LNNFVGNHLM NQSIGGHVDN 180 YNSYRVNQEN PNMPNQSFTN TMIMNHNAGT SERRGYPGID HMNNNNNNKS VFRSSYQLGK 240 HGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00067621001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013614968.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.4-like | ||||
Swissprot | Q9SUA9 | 6e-63 | DOF44_ARATH; Dof zinc finger protein DOF4.4 | ||||
TrEMBL | A0A078JM43 | 0.0 | A0A078JM43_BRANA; BnaCnng56790D protein | ||||
TrEMBL | A0A0D2ZUL0 | 0.0 | A0A0D2ZUL0_BRAOL; Uncharacterized protein | ||||
STRING | Bo01304s020.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21050.1 | 2e-65 | Dof-type zinc finger domain-containing protein |
Publications ? help Back to Top | |||
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