PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00067590001 | ||||||||
Common Name | GSBRNA2T00067590001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 386aa MW: 42560.1 Da PI: 9.4229 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.6 | 1.3e-38 | 122 | 181 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s+ntkfCyynny++sqPryfC++C+ryWt+GG++rnvPvG+grrknk + GSBRNA2T00067590001 122 PDKILPCPRCESANTKFCYYNNYNVSQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGW 181 7899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 119 | 179 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.8E-32 | 124 | 179 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.546 | 126 | 180 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 128 | 164 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MSKSRDIKLF GTTITSLSSV NHYDPSPWPA AHGGSDQSKE ASSSSSSSCS PSIRPDRVLA 60 AKNGQENSRF KDPYTLSHLN EPPKAASEIL SPISSKTNTD QQSELTTTST SAADKPTTLK 120 KPDKILPCPR CESANTKFCY YNNYNVSQPR YFCRNCQRYW TAGGSMRNVP VGSGRRKNKG 180 WPSSNHYLQV TSEDYENNNN LGTILSFGSS ESSVTETGKH QPGDTKITAD SASQEQRTRQ 240 GFLPPQVIFP NNSSPWPYQW SPTGPNANFY PIPFYWGCTV PVWPTSETPP CLGKRSRDQT 300 EGGMKDATTI TRARVVSETI SISEATKSTV WSPKPERKTE GFSLFNGFET KGSNRRSLVP 360 ETSINIQANP AAMSRSMNFR ENMQQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.13728 | 6e-52 | leaf| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00067590001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353482 | 0.0 | AK353482.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-E10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013693924.1 | 0.0 | cyclic dof factor 5-like | ||||
Swissprot | Q9SEZ3 | 0.0 | CDF5_ARATH; Cyclic dof factor 5 | ||||
TrEMBL | A0A078JM29 | 0.0 | A0A078JM29_BRANA; BnaC06g43390D protein | ||||
STRING | Bo6g095390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13090 | 17 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69570.1 | 0.0 | Dof family protein |
Publications ? help Back to Top | |||
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