PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00067589001
Common NameGSBRNA2T00067589001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 299aa    MW: 34646.1 Da    PI: 9.5206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00067589001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.71e-1172118147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-.HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt.lkqcksrwqky 47 
                          rg W + Ed +l+++v++ G+ +W++Ia++++ gR+ +k+c++rw++ 
  GSBRNA2T00067589001  72 RGHWRPAEDAKLKKLVALDGPQNWNLIAEKLQ-GRSaGKSCRLRWFNQ 118
                          899*****************************.999459******996 PP
2Myb_DNA-binding56.37.3e-18125168146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++++eE+++l +a++++G++ W+ Iar ++ gRt++++k++w+ 
  GSBRNA2T00067589001 125 RRAFSEEEEQRLMQAHNLYGNK-WAMIARFFP-GRTDNSVKNHWHV 168
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.34267119IPR017930Myb domain
SuperFamilySSF466891.34E-2570166IPR009057Homeodomain-like
SMARTSM007172.8E-771121IPR001005SANT/Myb domain
PfamPF002492.1E-1172118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2273126IPR009057Homeodomain-like
CDDcd001674.20E-975117No hitNo description
PROSITE profilePS5129425.781120174IPR017930Myb domain
SMARTSM007171.2E-14124172IPR001005SANT/Myb domain
PfamPF002493.9E-15125167IPR001005SANT/Myb domain
CDDcd001672.96E-11127167No hitNo description
Gene3DG3DSA:1.10.10.603.8E-21127173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSEDHRRWMD QTASCGYFSL DISNYQHSGH SYASHREEEI KDPNQSNYGK RSKKETRVCG  60
SFRHSSKASV VRGHWRPAED AKLKKLVALD GPQNWNLIAE KLQGRSAGKS CRLRWFNQLD  120
PRINRRAFSE EEEQRLMQAH NLYGNKWAMI ARFFPGRTDN SVKNHWHVIM ARKFREQSSV  180
YRRRKTVIPL KPLVNPNPQY SCNDFDPSRS DTIHLVSNDK NHLMLPIPCF PGYAHGNESP  240
LMLGMLENQM MVDDHSARTR EATTFDFLNQ TEKCEMLGEG MNEQKKPHFF DFLGLGTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-29701742105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00067589001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590777.10.0PREDICTED: transcription factor MYB75
SwissprotQ9SEZ41e-152MY105_ARATH; Transcription factor MYB105
TrEMBLA0A078JK270.0A0A078JK27_BRANA; BnaC06g43380D protein
STRINGBo6g095400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-154myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]