PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00067262001 | ||||||||
Common Name | GSBRNA2T00067262001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 391aa MW: 43419 Da PI: 4.6086 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.9e-20 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r +lg+f+taeeAa+a++aa+++++g GSBRNA2T00067262001 123 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 172 69*******.**********954...39************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.10E-17 | 123 | 181 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 123 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-22 | 123 | 181 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.6E-40 | 123 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.54 | 123 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.2E-13 | 124 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MCGGAIISDF IPPPSSRRVT SEFLWPDLKK NKGKASKKRS DFFDLDDEFE ADFQGFEDDD 60 ASFDCEDDDE DDDVFAKVKP FVFTATTKPV ASPPTATGSV SGKKIIESGG QAEKSAKRKR 120 KNQYRGIRQR PWGKWAAEIR DPRKGSREWL GTFDTAEEAA RAYDAAARRI RGSKAKVNFP 180 EESNNNRSVS QKRPSAKKLV AKPNQSPALV QQPMSQYCNN SFGDVSFVEE KPQMYNNQFG 240 LANSYNNHYF SSDQGSNSFD CSEFGWSDHG PKTPEISSML VGNNQAPFTE ETNAAKKLKP 300 SSDDGTSNQS DDLMAYLDNA LWESPSPLEV EAMLGVDAVA VTQGEENPMD LWSLDDINYM 360 LEGDFAVEGG MVQVTTWSLL HRLLSYMNVF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-22 | 122 | 189 | 13 | 81 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.3790 | 2e-61 | flower| leaf| microspore-derived embryo| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00067262001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117065.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
Refseq | XP_009117071.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
Swissprot | Q9LUM4 | 1e-172 | RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | A0A078HMK7 | 0.0 | A0A078HMK7_BRANA; BnaA01g29490D protein | ||||
STRING | Bra021543.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 1e-159 | related to AP2 2 |