PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066976001
Common NameGSBRNA2T00066976001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 293aa    MW: 31356.1 Da    PI: 8.3309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066976001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-181358147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd+ll  +v+++G+++W++I++ +  gR++k+c++rw + 
  GSBRNA2T00066976001 13 KGPWSPEEDQLLQTLVQKHGPRNWSLISKPIS-GRSGKSCRLRWCNQ 58
                         79******************************.***********985 PP
2Myb_DNA-binding52.11.5e-1667109347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++++eEde ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  GSBRNA2T00066976001  67 AFSPEEDEMILLAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.18863IPR017930Myb domain
SuperFamilySSF466892.26E-3110106IPR009057Homeodomain-like
SMARTSM007174.5E-151261IPR001005SANT/Myb domain
PfamPF002491.3E-171358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-251466IPR009057Homeodomain-like
CDDcd001671.88E-141557No hitNo description
SMARTSM007174.1E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129419.62665114IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2267113IPR009057Homeodomain-like
PfamPF002494.5E-1467109IPR001005SANT/Myb domain
CDDcd001672.76E-1167110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSGSTRKETD RIKGPWSPEE DQLLQTLVQK HGPRNWSLIS KPISGRSGKS CRLRWCNQLS  60
PEVEHRAFSP EEDEMILLAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSGGGGW  120
TSDDGGNGGY DGSLTDEQPL KRTASGGGGG GGVVSTGLFM SPGSPSGSDV SEQSSGPVSH  180
VYKPKARAGG VVIESAVKDP ATSLSLSLPW VNESTKGRDT AELFPARKQE EERGTFSGEF  240
MTVVQEMIKT EVRSYMAELQ LGIGGGGSSC MVQGVNGPSV GFRNFIEIVK IE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-41121143105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-401211457159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-401211457159MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-41121143105C-Myb DNA-Binding Domain
1msf_C4e-41121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066976001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140453.10.0PREDICTED: transcription factor MYB44
SwissprotO231601e-131MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A078HQ860.0A0A078HQ86_BRANA; BnaA04g13540D protein
TrEMBLA0A3P6CK830.0A0A3P6CK83_BRACM; Uncharacterized protein
STRINGBra032176.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-121myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]