PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00066940001 | ||||||||
Common Name | GSBRNA2T00066940001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 16489.8 Da PI: 8.2107 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 38 | 75 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R d+ ++++ L++++ + +K + a++L+ A +YI L GSBRNA2T00066940001 38 RKDKAGDRISALQQIVSPY-----GKTDTASVLQDALHYIEFL 75 66777799********999.....9***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.137 | 26 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-10 | 37 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-7 | 37 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEFSREAGMM MENKRSVCSL EESSIKRHKS DLSFSSKRKD KAGDRISALQ QIVSPYGKTD 60 TASVLQDALH YIEFLHEQVK VLSAPYLQTM TAATQEELEQ YSLRNRGLCL VPMEYTAGVA 120 QSNGADIWAP VKTPPSPAFG VKSQSPFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00066940001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ576040 | 1e-148 | AJ576040.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-alpha gene). | |||
GenBank | AK230257 | 1e-148 | AK230257.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-23-B19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605593.1 | 1e-108 | PREDICTED: transcription factor bHLH113-like isoform X2 | ||||
Swissprot | Q7XJU2 | 2e-94 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A078JM07 | 1e-107 | A0A078JM07_BRANA; BnaAnng25330D protein | ||||
STRING | Bo8g005780.1 | 1e-107 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 7e-97 | bHLH family protein |
Publications ? help Back to Top | |||
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