PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00066805001 | ||||||||
Common Name | GSBRNA2T00066805001, LOC106407137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 273aa MW: 30221.6 Da PI: 5.4933 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.6 | 1.3e-35 | 12 | 102 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d++++ ++sw+e+g++fvv+++ efak++LpkyFkh+nf+SF+RQLn+YgF+k+ ++ weF++++F++g++ GSBRNA2T00066805001 12 FLSKTYQLVDDHSTDGVVSWNEDGTAFVVWETAEFAKDLLPKYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDHFRRGQE 92 9***************************************************************9999.........************* PP XXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkk 101 +ll++i+r+k GSBRNA2T00066805001 93 DLLSEIRRRK 102 ********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.7E-38 | 4 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.8E-59 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.12E-34 | 9 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.2E-32 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-20 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-20 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MTAAQRSVPA PFLSKTYQLV DDHSTDGVVS WNEDGTAFVV WETAEFAKDL LPKYFKHNNF 60 SSFIRQLNTY GFRKTVPDKW EFANDHFRRG QEDLLSEIRR RKAVIAAAAE PNSAGDDDSM 120 SSPGSKNPGS VENMVADLSG ENEKLKREND SLSSELAAAK RLRDELVTFL TDQLKVGPEQ 180 IDQMVKGGKF KPTVTEYCSS DEVSDCEGCG GDGEEKEGAG EGLKLFGVWV KGERKKRGRD 240 EKNFVVGGSH RTTDIKNVDF HAPLWKSSKV CN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-26 | 2 | 101 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-26 | 2 | 101 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-26 | 2 | 101 | 20 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00066805001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595493.1 | 0.0 | PREDICTED: heat stress transcription factor B-1-like | ||||
Refseq | XP_013703391.1 | 0.0 | heat stress transcription factor B-1 | ||||
Swissprot | Q96320 | 1e-140 | HSFB1_ARATH; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A078JMX1 | 0.0 | A0A078JMX1_BRANA; BnaCnng56320D protein | ||||
TrEMBL | A0A0D3DI34 | 0.0 | A0A0D3DI34_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g118320.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-122 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 106407137 |